Query= MSMg01no515_o08.b1 MSMg01no515_o08.b1 CHROMAT_FILE:
MSMg01no515_o08.b1 PHD_FILE: MSMg01no515_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:24 2005
(574 letters)
>mm_chr16_85281755_85282728
Length = 974
Score = 975 bits (504), Expect = 0.0
Identities = 564/598 (94%), Gaps = 25/598 (4%)
Strand = Plus / Plus
Query: 1 tactggtaaattgtgaatccctcctttccatcacgcccagctttttttctaaaaggatta 60
|||||||||||||||||| ||||||||||||||| |||||| |||||||| |||||||||
Sbjct: 190 tactggtaaattgtgaattcctcctttccatcacacccagc-ttttttcttaaaggatta 248
Query: 61 aattagagcctagattctcctgaaatattactaaaatattaagatgcttggtgtatgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aattagagcctagattctcctgaaatattactaaaatattaagatgcttggtgtatgttt 308
Query: 121 gggatctgattcacacttcagtagctgaaaagtgagtctgagaactttcagggcgttgca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 309 gggatctgattcacacttcagtagctgaaaagtgagtctgagaactttcagggcattgtg 368
Query: 181 agggcgtcgt------------gagggcgtggcgttcctgagaacctcccctttcttcgt 228
|||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 369 agggcgtcgtgaggggcgtcacgagggcgtggccttcctgagaacctcccctttcttcgt 428
Query: 229 tgtttcttctctactgcgacaggttcctctttctgtcctctaggctttcgttgaccttct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgtttcttctctactgcgacaggttcctctttctgtcctctaggctttcgttgaccttct 488
Query: 289 ggaacacactttactagtaaatacaccaaatttacacaaaatatttttataattgtagga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggaacacactttactagtaaatacaccaaatttacacaaaatatttttataattgtagga 548
Query: 349 taacccaagaccctaaagaaggctcagctcatgttaagggtagcaatgtgagcaagtgca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 taacccaagaccctaaagaaggctcagctcatgttaagggtagcaatgtgagcaagtgca 608
Query: 409 tggaagtggctccatggaattctctgttaagctcattgaaggaaggaaaagtaattactt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tggaagtggctccatggaattctctgttaagctcattgaaggaaggaaaagtaattactt 668
Query: 469 ttggactgaattggacaatagacaattttagcaaagaatctctctctctctctctctctc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ttggactgaattggacaatagacaattttagcaaagaatctctctctctctctctctctc 728
Query: 529 tctctctctctctctctctctct--ctct----------ccccccccccccatgtgtg 574
||||||||||| ||||| ||||| |||| |||||||||||||||||||
Sbjct: 729 tctctctctctatctctatctctatctctatctttcttcccccccccccccatgtgtg 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_o08.g1 MSMg01no515_o08.g1 CHROMAT_FILE:
MSMg01no515_o08.g1 PHD_FILE: MSMg01no515_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:24 2005
(655 letters)
>mm_chr16_85465219_85466273
Length = 1055
Score = 1220 bits (631), Expect = 0.0
Identities = 649/655 (99%)
Strand = Plus / Minus
Query: 1 aagggttctactaaataggcaagacattttccctcaagccgtagagaatcatttagctca 60
||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 855 aagggttctcctaaataagcaagacattttccctcaagctgtagagaatcatttagctca 796
Query: 61 gagccacgtgctgtgcttgagactggactcccttccttcagacctttgaggcagattctc 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 795 gagccacgtgctgtgcttgagactggactccctcccttcagacctttgaggcagattctc 736
Query: 121 tttgttttccttctcaggggcacggcgattgctggcatcgtgtttggaatcgtgttcatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tttgttttccttctcaggggcacggcgattgctggcatcgtgtttggaatcgtgttcatc 676
Query: 181 atgggggtcattgcaggaatcgccatctgcatctgtatgtgcatgaagaacaaccggggg 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 675 atgggggtcattgcaggaatcgccatctgcatctgcatgtgcatgaagaacaaccggggg 616
Query: 241 acccgcgtgggggtcatcagagcagcacacatcaacgccatctcctatcccagtaagcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 acccgcgtgggggtcatcagagcagcacacatcaacgccatctcctatcccagtaagcaa 556
Query: 301 catggctcacgattgaaggaagaaaggggtttgctactgaggctctagtccttcaaaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 catggctcacgattgaaggaagaaaggggtttgctactgaggctctagtccttcaaaaga 496
Query: 361 cattaagagactctccttgaaataatccccaattttctagagtattcccaaacaatgata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cattaagagactctccttgaaataatccccaattttctagagtattcccaaacaatgata 436
Query: 421 gattgaagctctacctttgaagagagatcttggtaagaaagaaaccaattcacgttacat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gattgaagctctacctttgaagagagatcttggtaagaaagaaaccaattcacgttacat 376
Query: 481 tttgaatatagtcctactctcaatagctacaatcgcgagtcagccagaatgaagataaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tttgaatatagtcctactctcaatagctacaatcgcgagtcagccagaatgaagataaat 316
Query: 541 agaaaattcacacccattctgtctacctgccaatgagttctgacaagcaattatggaaaa 600
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 315 agaaaattcacacccattctgtctacctgccaatgagttctgacaaacaattatggaaaa 256
Query: 601 agtatgcaatctgtcttaataaacttgcctctgaggcagtaggtatgtatgtctt 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agtatgcaatctgtcttaataaacttgcctctgaggcagtaggtatgtatgtctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
