MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-516E03
Chromosome	16 (Build37)
Map Location	19,424,744 - 19,425,035
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165
Downstream gene	Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5
Link	Open Mouse BAC browser

Click to get alignment info.

name	Comt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12846 MGI:88470
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Txnrd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26462 MGI:1347023
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gnb1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13972 MGI:1338057
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Tbx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21380 MGI:98493
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gp1bb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14724 MGI:107852
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Sept5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18951 MGI:1195461
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC622795 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622795
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 32 mRNAs, 2575 ESTs, 6 Proteins pseudo : _no_value

name	Cldn5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12741 MGI:1276112
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdc45l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12544 MGI:1338073
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ufd1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22230 MGI:109353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2510002D24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72307 MGI:1919557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrpl40 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18100 MGI:1332635
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hira (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15260 MGI:99430
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Igl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:111519 MGI:96526
definition	gene_synonym : Igl-x note : immunoglobulin lambda chain complex

name	Igl-C1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110785 IMGT/GENE-DB:IGLC1 MGI:99546
definition	gene_synonym : Clambda1 note : immunoglobulin lambda chain, constant region 1

name	Igl-J1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:404737 IMGT/GENE-DB:IGLJ1
definition	note : immunoglobulin lambda chain, joining region 1

name	Igl-C3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110787 IMGT/GENE-DB:IGLC3 MGI:99886
definition	note : immunoglobulin lambda chain, constant region 3

name	Igl-J3p (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:404741 IMGT/GENE-DB:IGLJ3P
definition	gene_synonym : IGLJ3P note : immunoglobulin lambda chain, joining region 3 pseudogene pseudo : _no_value

name	Igl-J3 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:404740 IMGT/GENE-DB:IGLJ3
definition	gene_synonym : IGLJ3 note : immunoglobulin lambda chain, joining region 3

name	Igl-V1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16142 IMGT/GENE-DB:IGLV1 MGI:96530
definition	gene_synonym : 1810027O01Rik; IgL note : immunoglobulin lambda chain, variable 1

name	Igl-C4 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:404736 IMGT/GENE-DB:IGLC4
definition	note : immunoglobulin lambda chain, constant region 4 pseudo : _no_value

name	Igl-J4 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:404742 IMGT/GENE-DB:IGLJ4
definition	gene_synonym : IGLJ4 note : immunoglobulin lambda chain, joining region 4 pseudo : _no_value

name	Igl-C2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110786 IMGT/GENE-DB:IGLC2 MGI:99547
definition	gene_synonym : IGLC2 note : immunoglobulin lambda chain, constant region 2

name	Igl-J2 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:404739 IMGT/GENE-DB:IGLJ2
definition	gene_synonym : IGLJ2 note : immunoglobulin lambda chain, joining region 2

name	Igl-V3 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:404743 IMGT/GENE-DB:IGLV3
definition	gene_synonym : IGLV3 note : immunoglobulin lambda chain, variable 3

name	Igl-V2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110612 IMGT/GENE-DB:IGLV2 MGI:99548
definition	gene_synonym : IGLV2 note : immunoglobulin lambda chain, variable 2

name	Olfr164 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258443 MGI:3029998
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Olfr165 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258458 MGI:3029999
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Olfr166 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:259071 MGI:3030000
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Olfr167 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258937 MGI:3030001
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Olfr168 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258354 MGI:3030002
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Olfr169 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258158 MGI:3030003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Olfr170 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258959 MGI:3030004
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Olfr171 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258960 MGI:3030005
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043444 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043444
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 40 ESTs, 11 Proteins pseudo : _no_value

name	Lamp3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:239739 MGI:2441659
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B3gnt5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108105 MGI:2137302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042935 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042935
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	A930003A15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68162 MGI:1915412
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 29 ESTs

name	Klhl6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:239743 MGI:2686922
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042938 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042938
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 19 ESTs

name	Klhl24 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75785 MGI:1923035
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Yeats2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208146 MGI:2447762
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043459 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043459
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 731 ESTs, 7 Proteins

name	Map6d1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208158 MGI:3607784
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Parl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381038 MGI:1277152
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG224044 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224044 MGI:3644957
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abcc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27416 MGI:1351644
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Comt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352293 GeneID:12846 MGI:88470
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : catechol-O-methyltransferase transcript_id : NM_007744.2

name	Txnrd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:102468564 GeneID:26462 MGI:1347023
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin reductase 2 transcript_id : NM_013711.2

name	Gnb1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126273551 GeneID:13972 MGI:1338057
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein (G protein), beta polypeptide 1-like transcript_id : NM_001081682.1

name	Gnb1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126273561 GeneID:13972 MGI:1338057
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein (G protein), beta polypeptide 1-like transcript_id : NM_023120.4

name	Tbx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22094108 GeneID:21380 MGI:98493
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-box 1 transcript_id : NM_011532.1

name	Gp1bb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50345974 GeneID:14724 MGI:107852
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycoprotein Ib, beta polypeptide transcript_id : NM_010327.2

name	Gp1bb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50345975 GeneID:14724 MGI:107852
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycoprotein Ib, beta polypeptide transcript_id : NM_001001999.1

name	Sept5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47132508 GeneID:18951 MGI:1195461
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : septin 5 transcript_id : NM_213614.1

name	Cldn5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348145 GeneID:12741 MGI:1276112
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : claudin 5 transcript_id : NM_013805.3

name	Cdc45l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753365 GeneID:12544 MGI:1338073
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell division cycle 45 homolog (S. cerevisiae)-like transcript_id : NM_009862.1

name	Ufd1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367932 GeneID:22230 MGI:109353
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin fusion degradation 1 like transcript_id : NM_011672.3

name	2510002D24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126432561 GeneID:72307 MGI:1919557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2510002D24 gene transcript_id : NM_001033164.2

name	Mrpl40 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754861 GeneID:18100 MGI:1332635
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein L40 transcript_id : NM_010922.1

name	Hira (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:52426777 GeneID:15260 MGI:99430
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histone cell cycle regulation defective homolog A (S. cerevisiae) transcript_id : NM_010435.2

name	Olfr164 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33238893 GeneID:258443 MGI:3029998
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 164 transcript_id : NM_146451.1

name	Olfr165 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33238891 GeneID:258458 MGI:3029999
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 165 transcript_id : NM_146466.1

name	Olfr166 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22128824 GeneID:259071 MGI:3030000
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 166 transcript_id : NM_147068.1

name	Olfr167 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22129036 GeneID:258937 MGI:3030001
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 167 transcript_id : NM_146935.1

name	Olfr168 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22129588 GeneID:258354 MGI:3030002
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 168 transcript_id : NM_146357.1

name	Olfr169 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58801467 GeneID:258158 MGI:3030003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 169 transcript_id : NM_001011855.1

name	Olfr170 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22129010 GeneID:258959 MGI:3030004
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 170 transcript_id : NM_146957.1

name	Olfr171 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22129004 GeneID:258960 MGI:3030005
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 171 transcript_id : NM_146958.1

name	Lamp3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118601014 GeneID:239739 MGI:2441659
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lysosomal-associated membrane protein 3 transcript_id : NM_177356.3

name	B3gnt5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542176 GeneID:108105 MGI:2137302
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 transcript_id : NM_054052.2

name	LOC100042935 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149267290 GeneID:100042935
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins product : similar to hCG2028724 transcript_id : XM_001479103.1

name	Klhl6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34419627 GeneID:239743 MGI:2686922
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kelch-like 6 (Drosophila) transcript_id : NM_183390.1

name	LOC100042938 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149267293 GeneID:100042938
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 19 ESTs product : hypothetical protein LOC100042938 transcript_id : XM_001479111.1

name	Klhl24 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46447824 GeneID:75785 MGI:1923035
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kelch-like 24 (Drosophila) transcript_id : NM_029436.3

name	Yeats2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794612 GeneID:208146 MGI:2447762
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : YEATS domain containing 2 transcript_id : NM_001033237.1

name	LOC100043459 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149267451 GeneID:100043459
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 731 ESTs, 6 Proteins product : similar to SMT3B protein, transcript variant 1 transcript_id : XM_001480731.1

name	LOC100043459 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149267454 GeneID:100043459
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 357 ESTs, 2 Proteins product : similar to SMT3B protein, transcript variant 2 transcript_id : XM_001480733.1

name	Map6d1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:139948799 GeneID:208158 MGI:3607784
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MAP6 domain containing 1 transcript_id : NM_198599.2

name	Parl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142379687 GeneID:381038 MGI:1277152
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : presenilin associated, rhomboid-like transcript_id : NM_001005767.2

name	EG224044 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353947 GeneID:224044 MGI:3644957
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG224044 transcript_id : NM_183158.2

name	Abcc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66932953 GeneID:27416 MGI:1351644
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family C (CFTR/MRP), member 5 transcript_id : NM_013790.2

name	Abcc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66932955 GeneID:27416 MGI:1351644
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family C (CFTR/MRP), member 5 transcript_id : NM_176839.1

name	Txnrd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:102468565 GeneID:26462 MGI:1347023
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEP] [Evidence TAS] [Evidence IDA] GO_function : GO:0050660 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016654 - oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008430 - selenium binding [Evidence IEA]; GO:0004791 - thioredoxin-disulfide reductase activity [Evidence ISS] [Evidence IEA] GO_process : GO:0007507 - heart development [Evidence IMP]; GO:0030097 - hemopoiesis [Evidence IMP]; GO:0000305 - response to oxygen radical [Evidence IMP] [Evidence TAS] codon_start : 1 note : human EST 573010; TR beta product : thioredoxin reductase 2 protein_id : NP_038739.2 transl_except : (pos:18477865..18477867,aa:Sec)

name	Gnb1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126273552 GeneID:13972 MGI:1338057
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0009898 - internal side of plasma membrane [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS]; GO:0007242 - intracellular signaling cascade [Evidence ISS] codon_start : 1 product : guanine nucleotide binding protein (G protein), beta polypeptide 1-like protein_id : NP_001075151.1

name	Gnb1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84662738 CCDS:CCDS28022.1 GeneID:13972 MGI:1338057
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0009898 - internal side of plasma membrane [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS]; GO:0007242 - intracellular signaling cascade [Evidence ISS] codon_start : 1 product : guanine nucleotide binding protein (G protein), beta polypeptide 1-like protein_id : NP_075609.2

name	Tbx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22094109 CCDS:CCDS28023.1 GeneID:21380 MGI:98493
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0009952 - anterior/posterior pattern formation [Evidence IMP]; GO:0001568 - blood vessel development [Evidence IMP]; GO:0001708 - cell fate specification [Evidence IMP] [Evidence IGI]; GO:0007368 - determination of left/right symmetry [Evidence IMP]; GO:0007507 - heart development [Evidence IGI] [Evidence IMP]; GO:0042472 - inner ear morphogenesis [Evidence IMP]; GO:0042474 - middle ear morphogenesis [Evidence IMP]; GO:0007517 - muscle development [Evidence IMP]; GO:0001755 - neural crest cell migration [Evidence IMP]; GO:0042473 - outer ear morphogenesis [Evidence IMP]; GO:0007389 - pattern specification [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007605 - sensory perception of sound [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : T-box 1 protein_id : NP_035662.1

name	Gp1bb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754040 GeneID:14724 MGI:107852
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007596 - blood coagulation [Evidence IEA]; GO:0007155 - cell adhesion [Evidence ISS] [Evidence IEA]; GO:0007599 - hemostasis [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : glycoprotein Ib, beta polypeptide isoform 2 protein_id : NP_034457.1

name	Gp1bb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50345976 CCDS:CCDS28025.1 GeneID:14724 MGI:107852
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007596 - blood coagulation [Evidence IEA]; GO:0007155 - cell adhesion [Evidence ISS] [Evidence IEA]; GO:0007599 - hemostasis [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : glycoprotein Ib, beta polypeptide isoform 1 protein_id : NP_001001999.1

name	Sept5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47132509 GeneID:18951 MGI:1195461
definition	GO_component : GO:0005886 - plasma membrane [Evidence ISS]; GO:0008021 - synaptic vesicle [Evidence ISS]; GO:0019717 - synaptosome [Evidence IDA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] [Evidence ISS]; GO:0005198 - structural molecule activity [Evidence ISS] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0000910 - cytokinesis [Evidence ISS]; GO:0017157 - regulation of exocytosis [Evidence ISS]; GO:0016080 - synaptic vesicle targeting [Evidence ISS] codon_start : 1 note : cell division control related protein 1; peanut-like 1 homolog product : septin 5 protein_id : NP_998779.1

name	Cldn5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980735 CCDS:CCDS28026.1 GeneID:12741 MGI:1276112
definition	GO_component : GO:0016021 - integral to membrane [Evidence NAS]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence IDA] GO_function : GO:0042802 - identical protein binding [Evidence ISS]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0016338 - calcium-independent cell-cell adhesion [Evidence ISS]; GO:0016337 - cell-cell adhesion [Evidence IC] codon_start : 1 note : transmembrane protein deleted in VCFS product : claudin 5 protein_id : NP_038833.2

name	Cdc45l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753366 CCDS:CCDS28027.1 GeneID:12544 MGI:1338073
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation note : cell division cycle 45-like product : cell division cycle 45 homolog (S. cerevisiae)-like protein_id : NP_033992.1

name	Ufd1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981443 CCDS:CCDS28028.1 GeneID:22230 MGI:109353
definition	GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ubiquitin fusion degradation 1 like protein_id : NP_035802.2

name	2510002D24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701660 CCDS:CCDS28029.1 GeneID:72307 MGI:1919557
definition	codon_start : 1 product : hypothetical protein LOC72307 protein_id : NP_001028336.1

name	Mrpl40 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754862 CCDS:CCDS28030.1 GeneID:18100 MGI:1332635
definition	GO_component : GO:0005761 - mitochondrial ribosome [Evidence ISS]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : nuclear localization signal protein absent in velo-cardio-facial patients product : mitochondrial ribosomal protein L40 protein_id : NP_035052.1

name	Hira (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:52426778 CCDS:CCDS28031.1 GeneID:15260 MGI:99430
definition	GO_component : GO:0000790 - nuclear chromatin [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0007369 - gastrulation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : TUP1-like enhancer of split gene 1 product : histone cell cycle regulation defective homolog A protein_id : NP_034565.2

name	Igl-C1 (CDS detail)
type	CDS
link	vega ensembl MGI
xref	GeneID:110785 IMGT/GENE-DB:IGLC1 MGI:99546
definition	codon_start : 3 exception : rearrangement required for product gene_synonym : Clambda1

name	Igl-J1 (CDS detail)
type	CDS
link	vega ensembl
xref	GeneID:404737 IMGT/GENE-DB:IGLJ1
definition	codon_start : 2 exception : rearrangement required for product

name	Igl-C3 (CDS detail)
type	CDS
link	vega ensembl MGI
xref	GeneID:110787 IMGT/GENE-DB:IGLC3 MGI:99886
definition	codon_start : 3 exception : rearrangement required for product

name	Igl-J3p (CDS detail)
type	CDS
link	vega ensembl
xref	GeneID:404741 IMGT/GENE-DB:IGLJ3P
definition	codon_start : 2 gene_synonym : IGLJ3P pseudo : _no_value

name	Igl-J3 (CDS detail)
type	CDS
link	vega ensembl
xref	GeneID:404740 IMGT/GENE-DB:IGLJ3
definition	codon_start : 2 exception : rearrangement required for product gene_synonym : IGLJ3

name	Igl-V1 (CDS detail)
type	CDS
link	vega ensembl MGI
xref	GeneID:16142 IMGT/GENE-DB:IGLV1 MGI:96530
definition	codon_start : 1 exception : rearrangement required for product gene_synonym : 1810027O01Rik; IgL

name	Igl-C4 (CDS detail)
type	CDS
link	vega ensembl
xref	GeneID:404736 IMGT/GENE-DB:IGLC4
definition	codon_start : 1 pseudo : _no_value

name	Igl-J4 (CDS detail)
type	CDS
link	vega ensembl
xref	GeneID:404742 IMGT/GENE-DB:IGLJ4
definition	codon_start : 1 gene_synonym : IGLJ4 pseudo : _no_value

name	Igl-C2 (CDS detail)
type	CDS
link	vega ensembl MGI
xref	GeneID:110786 IMGT/GENE-DB:IGLC2 MGI:99547
definition	codon_start : 3 exception : rearrangement required for product gene_synonym : IGLC2

name	Igl-J2 (CDS detail)
type	CDS
link	vega ensembl
xref	GeneID:404739 IMGT/GENE-DB:IGLJ2
definition	codon_start : 2 exception : rearrangement required for product gene_synonym : IGLJ2

name	Igl-V3 (CDS detail)
type	CDS
link	vega ensembl
xref	GeneID:404743 IMGT/GENE-DB:IGLV3
definition	codon_start : 1 exception : rearrangement required for product gene_synonym : IGLV3

name	Igl-V2 (CDS detail)
type	CDS
link	vega ensembl MGI
xref	GeneID:110612 IMGT/GENE-DB:IGLV2 MGI:99548
definition	codon_start : 1 exception : rearrangement required for product gene_synonym : IGLV2

name	Olfr164 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33238894 CCDS:CCDS28032.1 GeneID:258443 MGI:3029998
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : GA_x54KRFPKG5P-15738260-15737319; olfactory receptor MOR279-2 product : olfactory receptor 164 protein_id : NP_666662.1

name	Olfr165 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33238892 CCDS:CCDS28033.1 GeneID:258458 MGI:3029999
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : GA_x54KRFPKG5P-15855164-15854223; olfactory receptor MOR279-1 product : olfactory receptor 165 protein_id : NP_666677.1

name	Olfr166 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22128825 CCDS:CCDS28034.1 GeneID:259071 MGI:3030000
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : GA_x54KRFPKG5P-15934912-15935850; olfactory receptor MOR270-1 product : olfactory receptor 166 protein_id : NP_667279.1

name	Olfr167 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22129037 CCDS:CCDS28035.1 GeneID:258937 MGI:3030001
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : GA_x54KRFPKG5P-15963726-15962788; olfactory receptor MOR272-1 product : olfactory receptor 167 protein_id : NP_667146.1

name	Olfr168 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22129589 CCDS:CCDS28036.1 GeneID:258354 MGI:3030002
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : GA_x54KRFPKG5P-15979009-15978071; olfactory receptor MOR271-1 product : olfactory receptor 168 protein_id : NP_666469.1

name	Olfr169 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58801468 CCDS:CCDS28037.1 GeneID:258158 MGI:3030003
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : GA_x54KRFPKG5P-16014972-16014031; olfactory receptor MOR273-3P product : olfactory receptor 169 protein_id : NP_001011855.1

name	Olfr170 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22129011 CCDS:CCDS28038.1 GeneID:258959 MGI:3030004
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : GA_x54KRFPKG5P-16052703-16051765; olfactory receptor MOR273-2 product : olfactory receptor 170 protein_id : NP_667168.1

name	Olfr171 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22129005 CCDS:CCDS28039.1 GeneID:258960 MGI:3030005
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : GA_x54KRFPKG5P-16071018-16070077; olfactory receptor MOR273-1 product : olfactory receptor 171 protein_id : NP_667169.1

name	Lamp3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118601015 GeneID:239739 MGI:2441659
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005765 - lysosomal membrane [Evidence IDA]; GO:0005764 - lysosome [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : dendritic cells-lysosome associated membrane glycoprotein product : lysosomal-associated membrane protein 3 protein_id : NP_796330.2

name	B3gnt5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542177 CCDS:CCDS28040.1 GeneID:108105 MGI:2137302
definition	GO_component : GO:0005622 - intracellular [Evidence ISS] GO_function : GO:0008457 - beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl- ceramide beta-1,3-acetylglucosaminyltransferase activity [Evidence ISS]; GO:0008917 - lipopolysaccharide N-acetylglucosaminyltransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0007417 - central nervous system development [Evidence ISS]; GO:0009247 - glycolipid biosynthesis [Evidence ISS]; GO:0006486 - protein amino acid glycosylation [Evidence ISS]; GO:0030148 - sphingolipid biosynthesis [Evidence TAS] codon_start : 1 product : UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein_id : NP_473393.2

name	LOC100042935 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149267291 GeneID:100042935
definition	codon_start : 1 product : similar to hCG2028724 protein_id : XP_001479153.1

name	Klhl6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34419628 CCDS:CCDS28041.1 GeneID:239743 MGI:2686922
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : kelch-like 6 protein_id : NP_899246.1

name	LOC100042938 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149267294 GeneID:100042938
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479161.1

name	Klhl24 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46447825 CCDS:CCDS28042.1 GeneID:75785 MGI:1923035
definition	GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : kelch-like 24 protein_id : NP_083712.4

name	Yeats2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794613 CCDS:CCDS28043.1 GeneID:208146 MGI:2447762
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 exception : mismatches in translation product : YEATS domain containing 2 protein_id : NP_001028409.1

name	LOC100043459 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149267455 GeneID:100043459
definition	codon_start : 1 product : similar to SMT3B protein isoform 2 protein_id : XP_001480783.1

name	LOC100043459 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149267452 GeneID:100043459
definition	codon_start : 1 product : similar to SMT3B protein isoform 1 protein_id : XP_001480781.1

name	Map6d1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:139948800 GeneID:208158 MGI:3607784
definition	codon_start : 1 product : MAP6 domain containing 1 protein_id : NP_941001.2

name	Parl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54261813 CCDS:CCDS28044.1 GeneID:381038 MGI:1277152
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] codon_start : 1 product : presenilin associated, rhomboid-like protein_id : NP_001005767.1

name	EG224044 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34147185 GeneID:224044 MGI:3644957
definition	codon_start : 1 exception : unclassified translation discrepancy product : hypothetical protein LOC224044 protein_id : NP_898981.1

name	Abcc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66932954 CCDS:CCDS28045.1 GeneID:27416 MGI:1351644
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; ATP-binding cassette, sub-family C (CFTR/MRP), member 5a; ATP-binding cassette, sub-family C (CFTR/MRP), member 5b product : ATP-binding cassette, sub-family C, member 5 isoform 1 protein_id : NP_038818.2

name	Abcc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66932956 CCDS:CCDS28046.1 GeneID:27416 MGI:1351644
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; ATP-binding cassette, sub-family C (CFTR/MRP), member 5a; ATP-binding cassette, sub-family C (CFTR/MRP), member 5b product : ATP-binding cassette, sub-family C, member 5 isoform 2 protein_id : NP_789809.1

name	Igl-C1 (CDS detail)
type	V_segment
link	vega ensembl
xref	GeneID:110785
definition	gene_synonym : Clambda1 standard_name : Igl-C1

name	Igl-V1 (CDS detail)
type	V_segment
link	vega ensembl
xref	GeneID:16142
definition	gene_synonym : 1810027O01Rik; IgL standard_name : Igl-V1

name	Igl-V3 (CDS detail)
type	V_segment
link	vega ensembl
xref	GeneID:404743
definition	gene_synonym : IGLV3 standard_name : Igl-V3

name	Igl-V2 (CDS detail)
type	V_segment
link	vega ensembl
xref	GeneID:110612
definition	gene_synonym : IGLV2 standard_name : Igl-V2

name	Igl-J1 (CDS detail)
type	J_segment
link	vega ensembl
xref	GeneID:404737
definition	standard_name : Igl-J1

name	Igl-J3p (CDS detail)
type	J_segment
link	vega ensembl
xref	GeneID:404741
definition	gene_synonym : IGLJ3P pseudo : _no_value standard_name : Igl-J3p

name	Igl-J3 (CDS detail)
type	J_segment
link	vega ensembl
xref	GeneID:404740
definition	gene_synonym : IGLJ3 standard_name : Igl-J3

name	Igl-J4 (CDS detail)
type	J_segment
link	vega ensembl
xref	GeneID:404742
definition	gene_synonym : IGLJ4 pseudo : _no_value standard_name : Igl-J4

name	Igl-J2 (CDS detail)
type	J_segment
link	vega ensembl
xref	GeneID:404739
definition	gene_synonym : IGLJ2 standard_name : Igl-J2

name	Igl-C3 (CDS detail)
type	C_region
link	vega ensembl
xref	GeneID:110787
definition	standard_name : Igl-C3

name	Igl-C4 (CDS detail)
type	C_region
link	vega ensembl
xref	GeneID:404736
definition	pseudo : _no_value standard_name : Igl-C4

name	Igl-C2 (CDS detail)
type	C_region
link	vega ensembl
xref	GeneID:110786
definition	gene_synonym : IGLC2 standard_name : Igl-C2

name	Igl (CDS detail)
type	misc_feature
link	vega ensembl
xref
definition	gene_synonym : Igl-x note : Region: immunoglobulin lambda enhancer Elambda3-1

name	Igl (CDS detail)
type	misc_feature
link	vega ensembl
xref
definition	gene_synonym : Igl-x note : Region: immunoglobulin lambda enhancer Elambda2-4

name	LOC622795 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149267435 GeneID:622795
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 32 mRNAs, 2575 ESTs, 6 Proteins product : similar to ribosomal protein S2 pseudo : _no_value transcript_id : XR_034800.1

name	LOC100043444 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149267446 GeneID:100043444
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 40 ESTs, 11 Proteins product : similar to peptidylprolyl isomerase D pseudo : _no_value transcript_id : XR_034814.1

name	A930003A15Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149267459 GeneID:68162 MGI:1915412
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 29 ESTs product : RIKEN cDNA A930003A15 gene transcript_id : XR_035452.1

clone name	MSMg01-128N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-209H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116A12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-088I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405D24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-301H21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-359B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402L04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-328J01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-149K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532E22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-073M14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-056O02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-326C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530G14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-534M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494N23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-537K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443G16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-146H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184H13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087E18
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-516E03.T7 (MSMg01no516_e03.b1)	MSMg01-516E03.TJ (MSMg01no516_e03.g1)
ACC	AG588298	AG588299
length	788	765
length of high quality (start - end)	300 (51 - 350)	613 (80 - 692)
definition	CHROMAT_FILE: MSMg01no516_e03.b1 PHD_FILE: MSMg01no516_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:55 2005	CHROMAT_FILE: MSMg01no516_e03.g1 PHD_FILE: MSMg01no516_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:55 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NNNAAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CGCGGAATTCAATAGAGTTGTCGAAATGCTAAAAAATACTAAACTGAAAT GAAGCTGGAAAGGAAAAATTAGTGCGTCAAAATAAAATGTAAGAAAGTAG AAATTCTCAGTTACAGAGTAGACCATGTGGAACATTGAATATCAGAGCTC AAAGAAAAAGTAGAGAAATTGGCAATTCATTCAAAGAAAAATTAAAATTG AAAATATATACATGAACAGAATATATAGAATCTTTTTGAATGCCATGTAA AAGACAAATGATCAAGAAAGCCAAATACTTCACCAAGTTAGAGGTANGGN CCNNNNNNAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNTNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNTNNTNTNNTTTTTTTTTTTTTTNTTTTNTTTNNNNTNTTTTTTTTN TTNTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTNTTNTTTTTTTTNNNTTTTTTTTTTTTTTTTTTTTNNTTNTTTTTTTT TTTTTTTNTTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTCTTTCTCTTT TTTTTTNTNNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTA TTTTTTTTNTTTTTTTTATTTTTTTTTTTTTNTTTTTN	NNCCGAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGCACAGGAAATTAACAA GATTACCCAACACAGAGATTAACAAGTGGAGTTTTATGAAATTTAAAAGT TTCTGAACAGCAGGAAACTATTACCAGACTAAGTAGCCTACAGACGGGAA AAACATCTTTACCAGTTCTACTTTAGACAGGAGTTAATATCTATATAAAG AACTGAAAACATGAAACACCAAAACCCCCAAATGGCCAAACACTGGACAA ATAGCCCTTGAAAGGAGAAATACAAAAAGATAATACATTCTTTTTTTAAT TAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCCAT ACCATCCCCCCACTACCCTACCCACCCACTCCCACTTCTTGGCCCTGGCA TTCACATGTGCTGAGGCATATAAAGTTTGCAAGACCAAGGGGTCTCTCTT CCCAATGATGGCCAACTAGGCCATCTTCTGCTACATATGCAGCTAGAGAC ACGAGCTCCGGGGGTACTGGTTAGTTCACATTGTTGTTCCACCTATAGGG TTGCAGACCCCTTTAGCTCCTTGAGTACATTCTCTAGCTCCTCCATTGGG GGCCCAGTGTTTGATCCAATAGCTGACTATGAGCATCCACTTCTGTGTTT GCCAGGCCCCAGCATAGCCTCACAAGAGACAGCTATAGCAGGGTCGTTTC AGCAAAATCTTGTTG
quality values	Open. Hide. 0 0 0 3 6 6 6 9 9 9 10 10 15 28 35 36 28 29 19 21 28 25 23 15 10 10 10 19 19 43 28 28 25 19 19 8 12 6 9 7 6 6 12 18 30 22 20 24 21 22 28 39 39 57 36 35 35 31 33 33 33 33 27 27 9 8 8 8 8 11 17 12 25 25 37 37 37 37 47 48 48 48 57 36 50 50 50 50 50 59 59 53 53 53 53 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 50 57 57 57 57 57 57 57 57 57 57 68 68 68 68 51 50 50 50 50 68 68 68 68 68 68 68 68 68 68 48 48 48 48 42 42 57 57 48 57 57 57 57 57 57 57 57 57 68 57 57 52 57 57 57 57 57 68 68 57 57 57 57 57 57 57 68 68 68 57 57 57 57 52 59 59 59 59 57 57 52 59 59 68 68 68 68 68 68 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 57 57 52 52 52 59 57 52 52 57 59 59 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 59 59 59 54 54 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 59 57 54 57 57 57 57 68 57 57 54 48 48 57 57 68 53 48 48 42 42 42 57 57 59 57 59 59 43 39 39 43 43 43 47 59 59 59 59 59 59 59 29 14 3 0 3 3 0 3 3 0 0 0 0 0 0 3 6 6 6 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 3 0 3 0 0 3 7 7 8 8 9 8 7 7 7 8 8 10 3 0 3 6 6 3 0 3 11 3 0 0 0 0 3 0 3 9 9 9 9 13 9 3 0 3 3 0 3 6 7 7 6 6 3 0 3 6 7 8 10 9 7 7 6 6 6 6 6 6 6 6 6 6 9 8 10 7 7 6 6 8 7 6 8 8 6 7 6 6 6 10 13 15 15 13 10 8 8 8 6 6 8 6 9 9 9 10 13 9 9 9 3 0 3 7 8 8 8 8 11 13 12 9 9 12 7 9 9 9 10 9 9 9 9 9 10 9 10 16 16 12 12 9 7 8 3 0 3 3 0 3 16 18 22 21 13 10 3 0 0 0 3 7 7 7 6 7 7 6 6 9 9 10 8 6 9 9 7 6 6 3 0 0 3 3 0 3 8 7 9 10 8 10 12 14 11 9 15 9 9 3 0 3 3 0 3 6 7 7 9 15 36 34 34 23 23 19 21 16 12 12 12 16 17 17 11 10 11 3 0 3 9 9 10 10 10 8 10 9 9 9 7 7 6 8 10 13 11 14 3 0 3 0 0 3 8 8 12 13 16 15 3 0 3 15 15 22 23 19 15 15 22 27 19 22 25 33 33 29 21 16 12 10 10 8 3 0 3 8 8 8 8 10 10 8 8 6 8 8 8 8 3 0 3 10 10 10 6 6 6 6 6 8 8 11 8 7 7 9 9 9 9 8 12 3 0 3 8 8 8 3 0	Open. Hide. 0 0 3 7 7 9 8 10 8 9 9 9 10 12 26 20 28 37 32 32 37 44 44 47 46 46 46 44 39 37 37 37 23 24 11 11 7 8 8 8 8 19 11 22 22 33 30 32 28 28 37 37 53 53 50 50 53 53 53 50 53 53 35 34 15 12 18 18 22 22 39 39 48 42 51 47 47 50 50 59 59 59 68 57 57 57 57 50 53 68 50 50 50 68 50 50 50 50 50 50 50 68 57 57 57 57 57 57 47 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 51 51 68 68 68 68 68 68 68 68 68 57 57 50 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 68 68 68 68 68 68 59 59 57 59 59 59 57 57 57 57 68 68 68 68 68 68 57 68 68 57 57 57 57 57 68 59 68 68 62 62 62 62 62 62 62 68 68 68 62 62 68 62 62 62 62 62 62 62 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 59 59 57 57 57 59 59 68 68 68 68 68 57 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 59 59 57 57 59 59 59 57 57 59 59 68 59 59 57 57 59 59 59 59 57 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 57 57 57 57 54 54 59 59 59 54 54 57 57 57 57 68 57 57 57 57 57 57 57 68 68 68 68 59 57 50 50 50 50 50 57 59 59 59 59 57 57 57 57 57 53 59 59 59 47 41 41 41 41 41 41 37 37 41 59 37 39 39 39 46 48 48 48 43 43 43 43 57 57 57 57 57 48 48 48 48 48 48 57 59 59 59 59 59 48 57 54 57 57 54 54 54 57 57 57 59 59 68 68 59 59 59 54 54 57 57 68 68 68 59 57 54 54 54 54 54 59 59 47 43 43 43 46 57 44 57 48 48 48 48 48 48 48 48 46 57 46 43 43 43 43 48 42 37 41 30 30 30 34 29 31 39 31 30 30 39 39 44 41 41 28 28 20 15 15 26 24 28 34 23 22 22 37 37 41 41 41 41 37 37 36 32 31 39 43 32 28 20 28 24 33 33 47 43 43 41 39 39 39 47 37 35 31 31 35 37 36 36 36 39 31 34 39 39 30 25 25 32 32 28 28 20 19 19 36 34 37 28 24 18 19 18 34 34 47 47 34 34 35 36 36 43 37 34 28 28 28 28 31 28 18 20 20 28 24 26 26 12 10 10 19 19 21 20 19 19 28 22 28 31 29 34 25 17 17 28 30 34 28 31 20 18 25 15 15 15 18 15 22 14 14 14 17 17 29 32 23 24 20 24 24 37 34 26 21 8 8 6 6 6 12 14 12 12 15 18 19 17 28 19 30 30 20 22 17 17 17 17

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no516_e03.b1 MSMg01no516_e03.b1 CHROMAT_FILE:
MSMg01no516_e03.b1 PHD_FILE: MSMg01no516_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:55 2005
         (300 letters)



>mm_chr16_19424540_19425239
          Length = 700

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatagagttgtcgaaatgctaaaaaatactaaactgaaatgaagctggaaagga 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaattcaatagagatgtcgaaatgctaaaaaatactaaactgaaatgaagctggaaagga 437

                                                                       
Query: 65  aaaattagtgcgtcaaaataaaatgtaagaaagtagaaattctcagttacagagtagacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaaattagtgcgtcaaaataaaatgtaagaaagtagaaattctcagttacagagtagacc 377

                                                                       
Query: 125 atgtggaacattgaatatcagagctcaaagaaaaagtagagaaattggcaattcattcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atgtggaacattgaatatcagagctcaaagaaaaagtagagaaattggcaattcattcaa 317

                                                                       
Query: 185 agaaaaattaaaattgaaaatatatacatgaacagaatatatagaatctttttgaatgcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agaaaaattaaaattgaaaatatatacatgaacagaatatatagaatctttttgaatgcc 257

                                                               
Query: 245 atgtaaaagacaaatgatcaagaaagccaaatacttcaccaagttagaggta 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atgtaaaagacaaatgatcaagaaagccaaatacttcaccaagttagaggta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information