BAC Information

Click to search

BAC

Clone NameMSMg01-516P17
Chromosome16 (Build37)
Map Location 36,301,675 - 36,302,325
singlet/doubletsinglet
Overlap genenone
Upstream geneAdcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1
Downstream geneEG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516P17.T7 (MSMg01no516_p17.b1)MSMg01-516P17.TJ (MSMg01no516_p17.g1)
ACCAG588847AG588848
length773760
length of high quality
(start - end)		651 (72 - 722)676 (79 - 754)
definitionCHROMAT_FILE: MSMg01no516_p17.b1 PHD_FILE: MSMg01no516_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:55 2005CHROMAT_FILE: MSMg01no516_p17.g1 PHD_FILE: MSMg01no516_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGACACTGGACCCAGAGGAGAGAATTGAGGCACAGGAACA
TGAGGGGAGGTATCAGCTAGCGTGGGAGAAGCTGAAATCCCAAATCTCAG
AATCAGTAATGTATGCTCAGAGTGGACAGTACACAAAGAACAGTTTAGAG
GAGCTTAAGTACTGAAGTAAATGTTATGTCTTGAAGCAATAAAAGAGAAA
TAAGAAATGTTTAGTAAACATACATAGATGCTGCAAAAAGGAAAGAAACT
GAGTATTGACAAATATAGAGAGAAATTTTAAACTTGAATTTAATAAAGTC
TTCAAAGAAAAGAGAGAATTGGCAAGATCAATAACTGAAAATATTTTCTG
TGTTAATAATGTAAAAATATATAGCAGAGGGCATTGGTACCCTTTAGAGT
CTCATTTCAATTATCATAGGTCTGAAGAAAGACTTCAGTATTCACAAGGT
AAAACAAGATAACTATCCTGTCATCTAATGAATTTGGGGTCTTCCCCTTG
TGAAAGAAAGATGAAATTTCAAGACCTGTAAGTCATATAAAGGACTCAGA
AATTGCTGGTTGTTTGTGAGCCTAGAGGTTGCCTGAGGCTGAGAACAAAC
AGGAACAAACCCGAGCATGCCCTGTAGTTAAAGCATTCCTGGGAACAGCT
TGACTATAAAGATAAAGAGGAATGTGAGGATATAACAGGGCTATCTGAAC
TGAGTCACAACCATCTGGCCCGG

NNAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTATTGATCTTCGGTCCTT
GGGCATTTCAGAAATTGACCCGATTTGTTAAATCTCAAGTTGATTCATCT
CTTTCAAGTGCATTTGTTTCAGTTCATTACCATTGGCTGGACGTTGGTGA
TAACAAGCAGGTTACTGGAGAAGAGGCAGACGCGGATGCCGCTTCATCAC
CCTCTTCTCGGGGAGAGAGACTCAATTTCCATAAAATGCTTAAGTAAGAT
CATCCCCCTCCCCCTAAATTCGGCCATCAGTCTCATGCCACAAATCATTT
ATAGATTGCCGTAGTCTGTGCTTTTCCGACATGGTAATATACGTTCTCGC
CACATTGGAAACTAAACAGCCATCCCAGGCTAGACACATCAAAAAATTAA
AACTTGAAGCCGTCGCCCGTGAGAGTTGTAAGACTAAGTACTGCACAGAG
ATTAGTCTAAAAGCTGTTAGACAGTCTCTGAGAGGCATGTCTGATTGCAT
AAAGGTTGAGTGCCCCAGGGACCTTTCCCCAGAAAAAACGGCACAGGAGC
AGGTCAGGGTTACTCTGGGTAAAGATCTGTGGGCCTGAGAGTCAATCCTG
TACATGGCCCCTAACATTACACACTGGGGATCAGACCTCTACCTCTACCC
ACGGAGCTTGCTTCGTTCCTAAATCCCTTGGCTAGCCCAAGTTATATCCA
AAAGACTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_p17.b1 MSMg01no516_p17.b1 CHROMAT_FILE:
MSMg01no516_p17.b1 PHD_FILE: MSMg01no516_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:55 2005
         (651 letters)



>mm_chr16_36301647_36302697
          Length = 1051

 Score = 1205 bits (623), Expect = 0.0
 Identities = 644/651 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagaggagagaattgaggcacaggaacatgaggggaggtatcagctagcgtgggagaag 60
           |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 679 ccagaggagagaattgaggcacaggaacatgaagggaggtatcagctagagtgggagaag 620

                                                                       
Query: 61  ctgaaatcccaaatctcagaatcagtaatgtatgctcagagtggacagtacacaaagaac 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgaaatcccaaatctcagagtcagtaatgtatgctcagagtggacagtacacaaagaac 560

                                                                       
Query: 121 agtttagaggagcttaagtactgaagtaaatgttatgtcttgaagcaataaaagagaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agtttagaggagcttaagtactgaagtaaatgttatgtcttgaagcaataaaagagaaat 500

                                                                       
Query: 181 aagaaatgtttagtaaacatacatagatgctgcaaaaaggaaagaaactgagtattgaca 240
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 499 aagaaatgtttagtaaacatacatagatgttgaaaaaaggaaagaaactgagtattgaca 440

                                                                       
Query: 241 aatatagagagaaattttaaacttgaatttaataaagtcttcaaagaaaagagagaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatatagagagaaattttaaacttgaatttaataaagtcttcaaagaaaagagagaattg 380

                                                                       
Query: 301 gcaagatcaataactgaaaatattttctgtgttaataatgtaaaaatatatagcagaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcaagatcaataactgaaaatattttctgtgttaataatgtaaaaatatatagcagaggg 320

                                                                       
Query: 361 cattggtaccctttagagtctcatttcaattatcataggtctgaagaaagacttcagtat 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cattgataccctttagagtctcatttcaattatcataggtctgaagaaagacttcagtat 260

                                                                       
Query: 421 tcacaaggtaaaacaagataactatcctgtcatctaatgaatttggggtcttccccttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcacaaggtaaaacaagataactatcctgtcatctaatgaatttggggtcttccccttgt 200

                                                                       
Query: 481 gaaagaaagatgaaatttcaagacctgtaagtcatataaaggactcagaaattgctggtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaaagaaagatgaaatttcaagacctgtaagtcatataaaggactcagaaattgctggtt 140

                                                                       
Query: 541 gtttgtgagcctagaggttgcctgaggctgagaacaaacaggaacaaacccgagcatgcc 600
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gtttgtgagcctagaggctgcctgaggctgagaacaaacaggaacaaacccgagcatgcc 80

                                                              
Query: 601 ctgtagttaaagcattcctgggaacagcttgactataaagataaagaggaa 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  ctgtagttaaagcattcctgggaacagcttgactataaagataaagaggaa 29


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |