Query= MSMg01no517_k20.b1 MSMg01no517_k20.b1 CHROMAT_FILE:
MSMg01no517_k20.b1 PHD_FILE: MSMg01no517_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:51 2005
(632 letters)
>mm_chr16_91869497_91870529
Length = 1033
Score = 1094 bits (566), Expect = 0.0
Identities = 578/582 (99%), Gaps = 3/582 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtccttcatcttcctctagtgcccacaccacgggaagtccctttgggtccccc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtccttcgtcttcctctagtgcccacaccacgggaagtccctttgggtccccc 264
Query: 65 atctatctcatttctcccc-gttctgaagggaaaaccccatgcaggagtagctctgcgca 123
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctatctcattt-tcccccgttctgaagggaaaaccccatgcaggagtagctctgcgca 323
Query: 124 tgcccccc-gggtggccaggtgctcaccagcctgtctttgcagtgtgccaggtgatcggg 182
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcccccccgggtggccaggtgctcaccagcctgtctttgcagtgtgccaggtgatcggg 383
Query: 183 atgtacgattacaccgcccagaacgatgacgaactagccttcagcaaaggccagatcatc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgtacgattacaccgcccagaacgatgacgaactagccttcagcaaaggccagatcatc 443
Query: 243 aacgtcctcaacaaggaggacccggactggtggaaaggagaagtcagtgggcaagttggg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aacgtcctcaacaaggaggacccggactggtggaaaggagaagtcagtgggcaagttggg 503
Query: 303 ctcttcccatccaattatgtaaagctgaccacagacatggaccccagccagcaatgtaag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctcttcccatccaattatgtaaagctgaccacagacatggaccccagccagcaatgtaag 563
Query: 363 tgccctggcggcccgcttcctctcctctctggttcctcccgtaagacatgcagcattgct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgccctggcggcccgcttcctctcctctctggttcctcccgtaagacatgcagcattgct 623
Query: 423 ctgcctctgccaagcttggtttgcagaactgaacgcagaccactgctgcatttgcaacag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgcctctgccaagcttggtttgcagaactgaacgcagaccactgctgcatttgcaacag 683
Query: 483 tctctttgaagaccttctgtgatgcaaaactatctcgtggggttttggttttgttttaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tctctttgaagaccttctgtgatgcaaaactatctcgtggggttttggttttgttttaaa 743
Query: 543 ttttcattctttctgtagcatgttccccctccttcccctccc 584
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttttcattctttctgtagcatgttccccctccttcccctccc 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1033
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1023
Effective search space: 636306
Effective search space used: 636306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_k20.g1 MSMg01no517_k20.g1 CHROMAT_FILE:
MSMg01no517_k20.g1 PHD_FILE: MSMg01no517_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:51 2005
(573 letters)
>mm_chr16_91996893_91997865
Length = 973
Score = 1033 bits (534), Expect = 0.0
Identities = 565/576 (98%), Gaps = 4/576 (0%)
Strand = Plus / Minus
Query: 1 cagaatccccattgcagt-ggtgcctcgaagagcaaaagaagggactgagtagcttctgc 59
|||||||||||||| ||| | | |||||||||||||||||||| ||||||||||||||||
Sbjct: 575 cagaatccccattgtagtagat-cctcgaagagcaaaagaaggtactgagtagcttctgc 517
Query: 60 aagctctgcccagttctggggttggtgggtgacaccgtgtatgtgcctgcccctgcacat 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 516 aagctctgcccagttctggggttggtgggtgacacagtgtatgtgcctgcccctgcacat 457
Query: 120 gcccctattgcaccctcagtgttatctaagggtgggtgcttcatcctcaagaggtcctgg 179
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 456 gccccgattgcaccctcagtgtcatctaagggtgggtgcttcatcctcaagaggtcctgg 397
Query: 180 ttgctgagactaaacagacacaccctgttgagattcaacccctttcttctgcttgtttag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttgctgagactaaacagacacaccctgttgagattcaacccctttcttctgcttgtttag 337
Query: 240 ttgagcctggcaatataaaaggagatatggagcagaaataaaagcatacacaaaataata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttgagcctggcaatataaaaggagatatggagcagaaataaaagcatacacaaaataata 277
Query: 300 atgagacacaaaaaaggtgagattcgaggacctgtgaagaaagcacacagggggattctc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atgagacacaaaaaaggtgagattcgaggacctgtgaagaaagcacacagggggattctc 217
Query: 360 agcgacatatagatagtgatgaggcacggctcggtggtaaagagcatgtactgcccttgc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 agcgacatatagatagtgatgaggcacggctcggtggtaaagagcatgtactgcccttgc 157
Query: 420 agaggacctgggttcggatcccagcatccacttggggggatctgacactctcttctggcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 agaggacctgggttcggatcccagcatccacttggggggatctgacactctcttctggcc 97
Query: 480 cctgccggcaactgcacgtat--cacacacacacacacacacacacacacacacacacac 537
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 96 cctgccggcaactgcacgtatcacacacacacacacacacacacacacacacacacacac 37
Query: 538 acacattaatttttaaaaaaagaatggaagtagaag 573
||||| ||||||||||||||||||||||||||||||
Sbjct: 36 acacactaatttttaaaaaaagaatggaagtagaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
