BAC Information

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BAC

Clone NameMSMg01-517L11
Chromosome16 (Build37)
Map Location 20,963,605 - 20,964,197
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060
Downstream geneLOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik, Vps8, 2510009E07Rik, Ehhadh, LOC100043489, LOC546659, Map3k13, LOC624037, Tmem41a, Liph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517L11.T7 (MSMg01no517_l11.b1)MSMg01-517L11.TJ (MSMg01no517_l11.g1)
ACCAG589398AG589399
length753816
length of high quality
(start - end)		617 (38 - 654)130 (68 - 197)
definitionCHROMAT_FILE: MSMg01no517_l11.b1 PHD_FILE: MSMg01no517_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:54 2005CHROMAT_FILE: MSMg01no517_l11.g1 PHD_FILE: MSMg01no517_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:54 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAA
ACATAAACTATCTTTATCTGGCAAAATCATACCCCTCCCAGAGCATGAGA
CAAATCATAGTCATCTGCTGTGGACAATCTGAAGCAGCCCCATGTCCCGC
ACCTGGGATTAAAAAAAAAAAAAAAAAAAAAAAGGAACATATTCACATAA
CATAACATAACTGAGTTTTTAAAAAACAAAATTCTCACAGCACCCACTGA
TTTGGTTAGCTCCAGGAATCTACCTGCTGCTAATGCTAGGGTCTCAGGTG
TAGACTGCCATCCCTGGTATTGAAAAAAAATATCCTAACAATCATTAAAT
TTTATCTTATGCGTATAGGTGTTTTGTTTGTATATATAGTTATTTGCCAG
TTCCAGGCCTGCCTGATGGAATCCAGAAGGCAGAAAAGGTCCCCTTGGAA
CTAAAGTTACAGAGGATTGAAAGCCACTGTATGGATGCTGGTAATTGAAG
CTGGGACCTCAGGAAGAGCAGACAATACTCTTAACCATGTGGTTTATCTG
TTCAGCATTTTAAGCCTTGCTTTTGAATAAGGTCTTCATGCTTGAGCAGC
AAACACTTTACCAACTGTACCATCTCAGTCTGACAGGCTTAATTTCTCCC
TCTGTTTTTGTATTCTTTAAGAATTGCATACAGTATATTTTTTAATGTGT
GCTCCTCTCCCCCAACTATTGTGGTAATTTCTTACCTCAATAAGCCTGTA
TAA

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTATCTGGAATGAGTAGAGTGCATTTCTTCTC
CATAGAAAATGTTTCTGTTGCACAACCTAATTGGTGCCTGAACAGGGACA
GGACAGAACCAGAGAAGAGATGAAGAGGCGGGGGGGGGGGGGGGGGTACT
ATTTTTTATTCTATTATTTTNTCTGATTTTTTTTATGTCGCGTCCTCTAC
CCTGTGTTTTTTTTTGCGTCTTTTTTTTTTTACAGGTTTGTAGAAAATCT
TGTTTTTTTCTTTTTTTGTCTTTCTTTGTTTGTTTTTATTTTTATCATTT
TTTTCATTTTGCGTTGTTCCTTGTCTTTTTTTTTTTATTTTCTATTTCTG
TAATCCCCCCCTCTTGTTTCTTTTTTTCTTTTCTCTTATTATTTATTTTT
AATTTTTTTTACTTCTTCTTTTGTCTTCTCTTTTCTTTTTTTTTTTCTCG
CTTTTCCCTTTTGTTTTTTCTTATGTCTCTATTTTTTTTATTTCTTTTTT
TATTCTTTATCCGGTTTGTCTTTTTACTTTTTTTTTTTTTTTTTCCTTCT
ATTTTTTTTTTTCCATTTCTTTACGCCTTTTTTATTTCCCTTTTTTTTTT
CTTTTTTTCTTTTATTTTTTTTTACCTCTATGTTTCTTTTCTATGTCTTT
TTTCCTCTTCTTCTAATATGTTTTGCTCTTTCTTTTTATATTTTCTCCTT
TTTATATTTCCTCTTATGATCTTTTTTCCTTTGATTTTATTCTTATTTTC
TCCCTTCCTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_l11.b1 MSMg01no517_l11.b1 CHROMAT_FILE:
MSMg01no517_l11.b1 PHD_FILE: MSMg01no517_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:54 2005
         (617 letters)



>mm_chr16_20963514_20964532
          Length = 1019

 Score =  864 bits (447), Expect = 0.0
 Identities = 564/617 (91%), Gaps = 28/617 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaacataaactatctttatctggcaa-aatcatacccctcccagagcatgaga 63
           ||||||||||||||||| |||||||||||| || ||||| || |||||||||||||||||
Sbjct: 684 gaattccaaacataaacgatctttatctgg-aagaatcacactcctcccagagcatgaga 626

                                                                       
Query: 64  caaatcatagtcatctgctgtggacaatctgaagcagccccatgtcccgcacctgggatt 123
           ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 625 caaatcatagtcagctgctgtggacaatctgaagcagccccatgtcccacacctgggatt 566

                                                                       
Query: 124 aaaaaaaaaaaaaaaaaaaaaaaggaacatattcacataacataacataactgagttttt 183
            |||||||||||||||                ||     |||||||||||||| |  |||
Sbjct: 565 taaaaaaaaaaaaaaa----------------tc-----acataacataactggg--ttt 529

                                                                       
Query: 184 aaaaaacaaaattctcacagcacccactgatttggttagctccaggaatctacctgctgc 243
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 528 aaaaaaaaaaattctcactgcacccactgatttggttagctccaggaatctacctcctgc 469

                                                                       
Query: 244 taatgctagggtctcaggtgtagactgccatccctggtattgaaaaaaaat--atcctaa 301
            ||||||||||||||||||||| |||||||||||||||||| |||||||||  |||||||
Sbjct: 468 caatgctagggtctcaggtgtacactgccatccctggtattaaaaaaaaataaatcctaa 409

                                                                       
Query: 302 caatcattaaattttatcttatgcgtataggtgttttgtttgtatatatagttatttgcc 361
           ||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||  ||
Sbjct: 408 caaccattaaattttatcttacgtgtataggtgttttgtttgtatatataattattcacc 349

                                                                       
Query: 362 agttccaggcctgcctgatggaatccag-aaggcagaaaaggtccccttggaactaaagt 420
           |||| |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 348 agttgcaggcctgcccgatggaacccagaaaggcagaaaaggtccccttggaactaaagt 289

                                                                       
Query: 421 tacagaggattgaaagccactgtatggatgctggtaattgaagctgggacctcaggaaga 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 288 tacagaggattgaaagccactgtatggatgctgggaattgaagctgggacctcaggaaga 229

                                                                       
Query: 481 gcagacaatactcttaaccatgtggtttatctgttcagcattttaagccttgcttttgaa 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 228 gcagacaatactcttaaccatgtggtttatctgttcagcattttaagccttgtttttgaa 169

                                                                       
Query: 541 taaggtcttcatgcttgagcagcaaacactttaccaactgtaccatctcagtctgacagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 168 taaggtcttcatgcttgagcagcaaacactttaccaactgtaccatctcagtctgacaga 109

                            
Query: 601 cttaatttctccctctg 617
           |||||||||||||||||
Sbjct: 108 cttaatttctccctctg 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1019
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1009
Effective search space:   612463
Effective search space used:   612463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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