Query= MSMg01no517_m09.b1 MSMg01no517_m09.b1 CHROMAT_FILE:
MSMg01no517_m09.b1 PHD_FILE: MSMg01no517_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:58 2005
(638 letters)
>mm_chr16_90154183_90155219
Length = 1037
Score = 756 bits (391), Expect = 0.0
Identities = 557/637 (87%), Gaps = 49/637 (7%)
Strand = Plus / Plus
Query: 1 gggagctatacagtaaggccctgtctgggagtgaggagggatggaggcaaggaaagaaga 60
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 gggagctatacaatacggccctgtctgggagtggggagggatggaggcaaggaaagaaga 260
Query: 61 gggagaggggccaggagagagaatctctcagcttggtaaagcagacttataaatccagct 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gggagaggggccaggagagagaatctctcagcttggtaaagcagatttataaatccagct 320
Query: 121 agctcgggaagctagaaaaggtgacagccttggagattttgtaagaacgcatctcagaat 180
| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 a-ctcgggaagctagaaaagatgacagccttggagattttgtaagaacacatctcagaat 379
Query: 181 agaaaataaaaagagctgacgggccagtgtgaaggctcagtaggtaaaggcactgtgctg 240
||||| ||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||
Sbjct: 380 agaaattaaaaagagctgatgggccagtgtgaaggctcagtaagtaaaggtactatgctg 439
Query: 241 cctgaagacgggagttcaagcctcaggacccaatatggtcggaggcagagaacccattct 300
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 440 cctgaagacgggagttcaagcctcaggacccaatatggttggaggcagaaaacccattct 499
Query: 301 caaaagttactctctgacttctacacagttgtctcggtacagatggataggtagacagat 360
||||| ||| |||| ||||| |||| ||||
Sbjct: 500 caaaa------------ctt--------------------agatagatagatagatagat 527
Query: 361 acatagatacatagatacatagatagatacatagatacatagatgattgatagatgatag 420
| ||||||| |||||| | ||| |||| |||||| |||||| || |||| | ||
Sbjct: 528 agatagataggtagataggt-gattgataggtagata----gatgatagacagat-a-ag 580
Query: 421 atagacaaatatagatagatgatagatagatagatagatagatagatagatagatagat- 479
||||| |||| |||||||| ||||||||||| |||||||||||| |||||||||
Sbjct: 581 ataga----tataaatagatgaccgatagatagat-gatagatagata--tagatagatg 633
Query: 480 agatagatagatagatagatagatagatagagcagctcagttgtgatcaaggcctgtggc 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 634 agatagatagatagatagatagatagatagagcagcccagttgtgatcaaggcctgtggc 693
Query: 540 tgcatccttgatgcaataactacatagtggatgttggcatttttttttt-actattttat 598
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 694 tgcatccctgatgcaataactacatagtggatgttggcatttttttttttactattttat 753
Query: 599 tgggtttttctatctcttattctaccctaatcccttt 635
|||||||||||||||||||||||||||||||||||||
Sbjct: 754 tgggtttttctatctcttattctaccctaatcccttt 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1037
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1027
Effective search space: 644956
Effective search space used: 644956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_m09.g1 MSMg01no517_m09.g1 CHROMAT_FILE:
MSMg01no517_m09.g1 PHD_FILE: MSMg01no517_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:58 2005
(603 letters)
>mm_chr16_90309593_90310595
Length = 1003
Score = 1071 bits (554), Expect = 0.0
Identities = 591/604 (97%), Gaps = 5/604 (0%)
Strand = Plus / Minus
Query: 1 actcctcttgaggcaactagaccttggaatacagaatttagcattacaatacatagcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 actcctcttgaggcaactagaccttggaatacagaatttagcattacaatacatagcaac 543
Query: 61 agaccagacctcagcaaaaagagaaggaatatactttctaagaaaacagccatctataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agaccagacctcagcaaaaagagaaggaatatactttctaagaaaacagccatctataga 483
Query: 121 cacagttagtaggttaaaccgcttagaaagactacatttttggttctcagttaccagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cacagttagtaggttaaaccgcttagaaagactacatttttggttctcagttaccagtga 423
Query: 181 aactggctcttcgtcttctctacatgatgttaatacaagacagctcaccagtgcacaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aactggctcttcgtcttctctacatgatgttaatacaagacagctcaccagtgcacaggg 363
Query: 241 ttgacatatttaatgtaacaagataaatatggtcatctccaagtaaatttggaattcttt 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 362 ttgaaatatttaatgtaacaagataaatatggtcatctccaagtaaatttggaattcctt 303
Query: 301 tgttgatatttaagaaattactctttggggctggagagatggctcagtagttaagagcac 360
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 302 tgttgttatttaagaaattactctttggggctggagagatggctcagcagttaagagcac 243
Query: 361 tggctgctctaccagaagacctgggttcaattcccagcactcgcatggcagctctcaact 420
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct: 242 tggctgctctaccagaagacctgggttcaattcccagc-cccccatggcagctctcaact 184
Query: 421 gtctttaactcctgttctaggggatccgacaccctcacacagacatacatgtagtcaaat 480
|||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||
Sbjct: 183 gtctttaactcctgttctaggggagccgac-ccct--cacagacatacatgtagtcaaat 127
Query: 481 taccaatgtacataagataaaaataaataatttttttttaaaaaagaaattactcttcaa 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 126 taccaatgtacataagataaaaataaataattttttttaaaaaaagaaattactcttcaa 67
Query: 541 atacttttttt-aaaaaagtagatgcagatttcaaaaataaagttctgggtccgagtcta 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 atactttttttaaaaaaagtagatgcagatttcaaaaataaagttctgggtccgagtcta 7
Query: 600 cact 603
||||
Sbjct: 6 cact 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
