BAC Information

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BAC

Clone NameMSMg01-518N16
Chromosome16 (Build37)
Map Location 58,422,858 - 58,576,464
singlet/doubletdoublet
Overlap geneDcbld2, St3gal6, LOC100043480
Upstream gene2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480, LOC629342, LOC100043477
Downstream geneGm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518N16.T7 (MSMg01no518_n16.b1)MSMg01-518N16.TJ (MSMg01no518_n16.g1)
ACCAG590264AG590265
length770770
length of high quality
(start - end)		626 (49 - 674)642 (78 - 719)
definitionCHROMAT_FILE: MSMg01no518_n16.b1 PHD_FILE: MSMg01no518_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:23 2005CHROMAT_FILE: MSMg01no518_n16.g1 PHD_FILE: MSMg01no518_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(58,422,858 - 58,423,479)(58,575,883 - 58,576,464)
sequence
NNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATTACACTTCCAAGGTTCTTCATATCAAAAATAGCATAATC
TGAAATGTTTAATTATCTATCAAAGAATTGTTTCTTAAATATTGGAACAC
TTCTAGGAATCACAAGCTAGTTTCAAATGTTAGATACTATTTTAGGGTAG
TTGTTTTTGCCTCTGGAAGGGAAAATGTTAATGATTGTTGAAAAGGGACT
TGTATTTCAGTTGCTTATTTTCACACTGGAGGTTTTTATAGCCTTATGAT
TTTACTCTAGGTTAGATCCAAGAGGGACAGAGAGAGGCAGCGAGAGGGAA
TTTTATGGTAGCTTTGGAAGGAAATGGTATTTTTTTATTATGTAAGAGCC
TGTTTTACTGTAAAATCAGTGGGTGTATTTCACACCCACATTTACTTCAT
TCTCTCCATATTTTTTATATTATTAACCCAGTATGCCTAGTTCTCGTGCA
TGAATGAAATCAGGGGTCGGAAATAAAGTGTAGTGTTGACTGAAAGCTAA
ACTTTATATGAGAAGTGTTTGTTCAGAAAGCAGAATTTATAGTATCCAAC
TCAAAAGTAGAGCAGCATGTAGTACTAACGTGGGTCAGAGAGTAAAACCC
CAGCCGAAGCCACTGCTGCTTCAGGACGGTCAAGGGCTGCGTGGGGACTG
TTGCTGCTTTGTGGACATGAAACTGCCTTTTGGTAATTGAAGTTACTCTA
TTGCTGTCAGTGACTGCATA

NCCGATTGCTATNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTGTCCTATCAGATCACCAT
GGACTAACGCTGGTCTTCAATAACAACAAAAATAATGGAAACTGAACAAC
GCTCTACTTAATAATAATTTGATCAAGGAAGAAATTTATTTAATATATCA
TCACCTATAAGATGTGCTTTGTAAAATTTCAACTTGGAAGGACTTCCTTT
TTAATCACGTAAAGTTTTGGCAACTCATTTTATTAAAGATTTTGCAACTG
AAACTGAAAGTAGTGGAGGGTCCATAAATTTAAATGAACTTCAGAGACCA
CATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAGTGAAAATGAAGACA
CATCATACCAAAACTTATGGGGCACAATGAAAGCAGTGGTAAGAGGAAAA
CTCACAGCTCTAAGTGCCTTCAAAAAGAAACTGGAGAACGCTTACACTAG
TAGCTAAACAGCACACCTGAAAGCTCTAGAACACAAAGAAGCAAATATAC
CCAAGAGGAGTAGATGGCAGAGAATAATCAATCTCAAGACTGAAATCCAA
GTAGAATCAAAATAGTAGTTTTACAAAAAAAAAAAAAAAATCAACAAAAC
CAGGAGCTGTCTCTTTGAGAAAAATCAAGATAGATAAACCTTTAGCCAGA
CTAACCTAAGGGCACAGAAGCAGTATCCAAATTAATAAATCAGAAATGAA
AAGGGAGACATAGTAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_n16.b1 MSMg01no518_n16.b1 CHROMAT_FILE:
MSMg01no518_n16.b1 PHD_FILE: MSMg01no518_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:23 2005
         (626 letters)



>mm_chr16_58422654_58423679
          Length = 1026

 Score = 1180 bits (610), Expect = 0.0
 Identities = 619/622 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattacacttccaaggttcttcatatcaaaaatagcataatctgaaatgtttaa 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattacacttccaaggttctgcatatcaaaaatagcataatctgaaatgtttaa 264

                                                                       
Query: 65  ttatctatcaaagaattgtttcttaaatattggaacacttctaggaatcacaagctagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttatctatcaaagaattgtttcttaaatattggaacacttctaggaatcacaagctagtt 324

                                                                       
Query: 125 tcaaatgttagatactattttagggtagttgtttttgcctctggaagggaaaatgttaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaaatgttagatactattttagggtagttgtttttgcctctggaagggaaaatgttaat 384

                                                                       
Query: 185 gattgttgaaaagggacttgtatttcagttgcttattttcacactggaggtttttatagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattgttgaaaagggacttgtatttcagttgcttattttcacactggaggtttttatagc 444

                                                                       
Query: 245 cttatgattttactctaggttagatccaagagggacagagagaggcagcgagagggaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttatgattttactctaggttagatccaagagggacagagagaggcagcgagagggaatt 504

                                                                       
Query: 305 ttatggtagctttggaaggaaatggtatttttttattatgtaagagcctgttttactgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttatggtagctttggaaggaaatggtatttttttattatgtaagagcctgttttactgta 564

                                                                       
Query: 365 aaatcagtgggtgtatttcacacccacatttacttcattctctccatattttttatatta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatcagtgggtgtatttcacacccacatttacttcattctctccatattttttatatta 624

                                                                       
Query: 425 ttaacccagtatgcctagttctcgtgcatgaatgaaatcaggggtcggaaataaagtgta 484
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 ttaacccactatgcctagttctcgtgcatgaatgaaatcaggggtcggaaataaagtata 684

                                                                       
Query: 485 gtgttgactgaaagctaaactttatatgagaagtgtttgttcagaaagcagaatttatag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtgttgactgaaagctaaactttatatgagaagtgtttgttcagaaagcagaatttatag 744

                                                                       
Query: 545 tatccaactcaaaagtagagcagcatgtagtactaacgtgggtcagagagtaaaacccca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tatccaactcaaaagtagagcagcatgtagtactaacgtgggtcagagagtaaaacccca 804

                                 
Query: 605 gccgaagccactgctgcttcag 626
           ||||||||||||||||||||||
Sbjct: 805 gccgaagccactgctgcttcag 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no518_n16.g1 MSMg01no518_n16.g1 CHROMAT_FILE:
MSMg01no518_n16.g1 PHD_FILE: MSMg01no518_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:23 2005
         (642 letters)



>mm_chr16_58575883_58576924
          Length = 1042

 Score = 1125 bits (582), Expect = 0.0
 Identities = 582/582 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtgtcctatcagatcaccatggactaacgctggtcttcaataacaacaaaaataatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 catgtgtcctatcagatcaccatggactaacgctggtcttcaataacaacaaaaataatg 523

                                                                       
Query: 61  gaaactgaacaacgctctacttaataataatttgatcaaggaagaaatttatttaatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaaactgaacaacgctctacttaataataatttgatcaaggaagaaatttatttaatata 463

                                                                       
Query: 121 tcatcacctataagatgtgctttgtaaaatttcaacttggaaggacttcctttttaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcatcacctataagatgtgctttgtaaaatttcaacttggaaggacttcctttttaatca 403

                                                                       
Query: 181 cgtaaagttttggcaactcattttattaaagattttgcaactgaaactgaaagtagtgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cgtaaagttttggcaactcattttattaaagattttgcaactgaaactgaaagtagtgga 343

                                                                       
Query: 241 gggtccataaatttaaatgaacttcagagaccacataaagaaagaaattaaagacttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gggtccataaatttaaatgaacttcagagaccacataaagaaagaaattaaagacttttt 283

                                                                       
Query: 301 agaatttagtgaaaatgaagacacatcataccaaaacttatggggcacaatgaaagcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agaatttagtgaaaatgaagacacatcataccaaaacttatggggcacaatgaaagcagt 223

                                                                       
Query: 361 ggtaagaggaaaactcacagctctaagtgccttcaaaaagaaactggagaacgcttacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggtaagaggaaaactcacagctctaagtgccttcaaaaagaaactggagaacgcttacac 163

                                                                       
Query: 421 tagtagctaaacagcacacctgaaagctctagaacacaaagaagcaaatatacccaagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tagtagctaaacagcacacctgaaagctctagaacacaaagaagcaaatatacccaagag 103

                                                                       
Query: 481 gagtagatggcagagaataatcaatctcaagactgaaatccaagtagaatcaaaatagta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gagtagatggcagagaataatcaatctcaagactgaaatccaagtagaatcaaaatagta 43

                                                     
Query: 541 gttttacaaaaaaaaaaaaaaaatcaacaaaaccaggagctg 582
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  gttttacaaaaaaaaaaaaaaaatcaacaaaaccaggagctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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