BAC Information

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BAC

Clone NameMSMg01-518O24
Chromosome16 (Build37)
Map Location 43,699,912 - 43,872,940
singlet/doubletdoublet
Overlap geneDrd3, Qtrtd1
Upstream geneBC002163, LOC667484, Zbtb20, LOC100043314
Downstream gene2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518O24.T7 (MSMg01no518_o24.b1)MSMg01-518O24.TJ (MSMg01no518_o24.g1)
ACCAG590328AG590329
length758771
length of high quality
(start - end)
549 (78 - 626)566 (77 - 642)
definitionCHROMAT_FILE: MSMg01no518_o24.b1 PHD_FILE: MSMg01no518_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:30 2005CHROMAT_FILE: MSMg01no518_o24.g1 PHD_FILE: MSMg01no518_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(43,699,912 - 43,700,460)(43,872,653 - 43,872,940)
sequence
NTTCCCTGGTTNTTCTAATAATTGGGCGGCTATACGACTCACTATTTCTA
GAGGATCCGCGGAATTCTCACATATAAACTGCATCATTTGGCTGGGCGTG
GTGGCGCACACCTTTAATCCCAGCACTCGGGAAGTAGAGGCAGGTGGATC
TCTGAATTCAAGGCCAGCCTGGTCTAAAGAGTGAGTTCCAGGACAGCTGG
GGCTACACTGTCTCGAAAACCAAACAAAGCAAAAAAAAAAAAAAAAAAAA
ATCTACACAGCCTCATACTTTCTATAGATACTGTTAAAATTCTCTAAAGG
GGAATAAATCGTTGCATATGCTCTCAAAGCCCTTTCTCTAGTGACAATTA
TTTTTTTCTGGGGCTTAAAATTGAACATATCTCAATGGTGTTGACTAAGG
TCTAATTATAATGAGAGTTCTGAAATCCTAAATGAAATTATTTGACCATA
TCAAATTCATGCTTGACTGTGTCTTCTCTTGAAGATTGGCGTTCCCAGAT
CTCCAGTTACATCCAACTTGCTGCTCATAGCAAACGAGTAAGTGTGTAGC
ACACGCTGTCAGAACAGCAAACTCGGACACCTGTGTGCCAGTTTGCTTCT
GGCCTTCCATTTCAGCTGCTAGCTCTAAACGAATTATCCCAACCGCGACC
CCCACCCCTTCNCACATACNCNCACACACACACACACACTCACACACACA
CACACACCATTGTCCGATAGTACACTCTGGTCTTTACACACCTCAGACAT
GTTTCTAA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGATTCTCCACTTCACCTCCCA
CGGTCTACGTGCCTGGCATGCCCCTGCTCATCATAGACTGCCTTTTCCCA
CGACCAGCAGTCTGGCCTTTCTGAGTTATTTTGCAGCTCTTTAAAGCATT
CATTTGTTTAATTTTGGGCCACCTATACCCAGATACTTTTTTTTTTTCTG
GATTTTTTTTTTTTAATTTCCAGGCATTTTTCCTCTCTCGCTTCTATTAG
GTTTGTTTCACTTACTCATCTCTTTATGAAACAGTCCCTGACACTTCTGG
AAACTCCCAGCCCTTCCCAAACAGCCACTAAGTGTGAACCAAGTATTGGA
ATGCATTAGAGTTATAGGGAACAGCTCATTCAAGCCACCCCCACCTCCTG
CCTAAGAGCTGAAGTCACTTTTGCTCTATTGTCTGGGTATAGAAGTGCTA
TTTCCCCACACTTTTGACTCACTGTGCCATCTCTGGTAGGTGGTTTGATA
CCGAGGTAAGGATCTCATTGTCCCCTGCCTGCCTTTCATATCTACTGACT
CAGTAGCTCTGTGTGTGCAGAGCACCCACATTTAGTTGTCTGAGTTTTGT
GCTTTTCTATCTATTTATTGGGGGTGCAGTGGGGAAAAAAATTTTTTTCC
AAGAAGTTTCTGGAGCTTTTCCTGTTGTATAGCTATTTATTCTTCCAAAG
ATAAGTTTTTTGCCTTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_o24.b1 MSMg01no518_o24.b1 CHROMAT_FILE:
MSMg01no518_o24.b1 PHD_FILE: MSMg01no518_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:30 2005
         (549 letters)



>mm_chr16_43699712_43700660
          Length = 949

 Score = 1062 bits (549), Expect = 0.0
 Identities = 549/549 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcatcatttggctgggcgtggtggcgcacacctttaatcccagcactcgggaagtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcatcatttggctgggcgtggtggcgcacacctttaatcccagcactcgggaagtag 260

                                                                       
Query: 61  aggcaggtggatctctgaattcaaggccagcctggtctaaagagtgagttccaggacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaggtggatctctgaattcaaggccagcctggtctaaagagtgagttccaggacagc 320

                                                                       
Query: 121 tggggctacactgtctcgaaaaccaaacaaagcaaaaaaaaaaaaaaaaaaaaatctaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggctacactgtctcgaaaaccaaacaaagcaaaaaaaaaaaaaaaaaaaaatctaca 380

                                                                       
Query: 181 cagcctcatactttctatagatactgttaaaattctctaaaggggaataaatcgttgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcctcatactttctatagatactgttaaaattctctaaaggggaataaatcgttgcat 440

                                                                       
Query: 241 atgctctcaaagccctttctctagtgacaattatttttttctggggcttaaaattgaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgctctcaaagccctttctctagtgacaattatttttttctggggcttaaaattgaaca 500

                                                                       
Query: 301 tatctcaatggtgttgactaaggtctaattataatgagagttctgaaatcctaaatgaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatctcaatggtgttgactaaggtctaattataatgagagttctgaaatcctaaatgaaa 560

                                                                       
Query: 361 ttatttgaccatatcaaattcatgcttgactgtgtcttctcttgaagattggcgttccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatttgaccatatcaaattcatgcttgactgtgtcttctcttgaagattggcgttccca 620

                                                                       
Query: 421 gatctccagttacatccaacttgctgctcatagcaaacgagtaagtgtgtagcacacgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatctccagttacatccaacttgctgctcatagcaaacgagtaagtgtgtagcacacgct 680

                                                                       
Query: 481 gtcagaacagcaaactcggacacctgtgtgccagtttgcttctggccttccatttcagct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcagaacagcaaactcggacacctgtgtgccagtttgcttctggccttccatttcagct 740

                    
Query: 541 gctagctct 549
           |||||||||
Sbjct: 741 gctagctct 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no518_o24.g1 MSMg01no518_o24.g1 CHROMAT_FILE:
MSMg01no518_o24.g1 PHD_FILE: MSMg01no518_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:30 2005
         (566 letters)



>mm_chr16_43872090_43873055
          Length = 966

 Score =  549 bits (284), Expect = e-160
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 279 tcccagcccttcccaaacagccactaagtgtgaaccaagtattggaatgcattagagtta 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 tcccagcccttcccaaacagccactaagtgtgaaccaagtattggaatgcattagagtta 792

                                                                       
Query: 339 tagggaacagctcattcaagccacccccacctcctgcctaagagctgaagtcacttttgc 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tagggaacagctcattcaagccacccccacctcctgcctaagagctgaagtcacttttgc 732

                                                                       
Query: 399 tctattgtctgggtatagaagtgctatttccccacacttttgactcactgtgccatctct 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tctattgtctgggtatagaagtgctatttccccacacttttgactcactgtgccatctct 672

                                                                       
Query: 459 ggtaggtggtttgataccgaggtaaggatctcattgtcccctgcctgcctttcatatcta 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ggtaggtggtttgataccgaggtaaggatctcattgtcccctgcctgcctttcatatcta 612

                                                           
Query: 519 ctgactcagtagctctgtgtgtgcagagcacccacatttagttgtctg 566
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gtgactcagtagctctgtgtgtgcagagcacccacatttagttgtctg 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)