BAC Information

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BAC

Clone NameMSMg01-519G17
Chromosome16 (Build37)
Map Location 24,317,495 - 24,346,611
singlet/doubletdoublet
Overlap genenone
Upstream geneSt6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009
Downstream geneLOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik, 5430420C16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519G17.T7 (MSMg01no519_g17.b1)MSMg01-519G17.TJ (MSMg01no519_g17.g1)
ACCAG590697AG590698
length760781
length of high quality
(start - end)		719 (31 - 749)584 (62 - 645)
definitionCHROMAT_FILE: MSMg01no519_g17.b1 PHD_FILE: MSMg01no519_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:07 2005CHROMAT_FILE: MSMg01no519_g17.g1 PHD_FILE: MSMg01no519_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,317,495 - 24,318,210)(24,346,104 - 24,346,611)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATCACGTAC
GATTTGGAGATGAAGGATCAGTCACGACCTCAACTCTGAGATAAGATGAA
ACTTCTTTTTAAACATTTAATCTTTCTAAACCATTCCATCTTATCATACC
ACTTTGTACTAAATCTGTGTGTTGACTTTAATATAAAATTAATTCTCCAA
AAATATGCAGGAAAGTTGGAATCCCAGAAACACCATGGTTTGGAGTGTAT
ATGTTTGGAGTTATTAAATTGCCCAAATGCTTGTACAAACATGACTGTAA
TGACCCTTTCTTTGTTCTGCAAAACAAACTGAAGATGCAGGCATTATCCA
GTTTCATGAATGGAGAAATTGAAGAACAAAGAAATTAAGAAGTTTCCTAA
CTGTATGGGATCAAAATACATAAATCTTGAATAAACACATATTTCTTGCT
TCTAGCCCTGACCTTTTTCTTGACTTCCATGTTTATTAACCATTTAGAAA
ATAACCAAGGAGTAACCAATTGGATCAAGCTTGAACCTGGGATGTTGTGC
TGGTGAGGCACAATACTCCCTAAGCCCATGATGAGCTAGACTTACCAAGA
TGGCAGCACTAGGCTCTCAGCATCCCACATATTTCATCCCAGTGTCTATG
CACGTCTCTTGACACCCTGCCAGATTTCTCTGTAGCATGAGTCACTCTAG
GCTCAAATTTTTCTCTCTAATCAATTTATCCATCAGCAATTTCATGAGCC
TGGAAGAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTGTTCATAAAGAACAACATTTAACTGGGACTGGCTTA
CAGGTTCAGAAGTTCAGTCCATTATCATCAAGGCAGGAGCATGGCAGCAC
CCAGGCAGGCATGGTGCAGGAGAAGCTGAGCGTTCTACATCTTCATCTGG
AGGTCAGTAGGAGACTCTTTTCCAGGCGGCTAGGACTAGGGTATTAAAGC
CCATGCCCACAGTGACACACCTACTCCAACAAGGCCTCACCTTCTGATAG
TGCCACTCCCCGGGCCAAGCATACATAAACCATCACAGTGTTAGGTAGTA
CTTTTATGAAAATATTTTGTTGTAGTTTTAAATAAAATAAAAGTGGTCAG
TGAGACCCATCTTTTTTATTTTATTGAAGCTCTGCCTCACTACAGGTTGT
ATGTACTCCCCGACTCTTAGTGCAGACCCACAGCACAGGGCTGAGACCCT
GGGCTCTGGAATATGCGTGACTGAGCAGACTTCTTCTTAGAGAATGAAAG
GGATTTATTCTCCCAGAGCACCTTGATTAGAAGACTCAGGAAGAGGCAGG
CGTAGCAGTTAGCACATGCTGTTTCTAACTAGTCCCCAAATGCTTCTCCA
CCTCGACTAGGCCATAAAGAAACAAAGTCAAGTACAAACACACACATGTG
TTTATATAGCTACTGCCTTTCAGTGAGCTCAGAGCATATGTCCATATAGA
TAATCCCATTGGGTCTTCTGGNTAGTGACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_g17.b1 MSMg01no519_g17.b1 CHROMAT_FILE:
MSMg01no519_g17.b1 PHD_FILE: MSMg01no519_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:07 2005
         (719 letters)



>mm_chr16_24317292_24318410
          Length = 1119

 Score = 1353 bits (700), Expect = 0.0
 Identities = 712/716 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctatcacgtacgatttggagatgaaggatcagtcacgacctcaactctgagata 63
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 204 ggaattctatcacgtaggatttggagatgaaggatcagtcacgacctcaactctgacata 263

                                                                       
Query: 64  agatgaaacttctttttaaacatttaatctttctaaaccattccatcttatcataccact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agatgaaacttctttttaaacatttaatctttctaaaccattccatcttatcataccact 323

                                                                       
Query: 124 ttgtactaaatctgtgtgttgactttaatataaaattaattctccaaaaatatgcaggaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgtactaaatctgtgtgttgactttaatataaaattaattctccaaaaatatgcaggaa 383

                                                                       
Query: 184 agttggaatcccagaaacaccatggtttggagtgtatatgtttggagttattaaattgcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agttggaatcccagaaacaccatggtttggagtgtatatgtttggagttattaaattgcc 443

                                                                       
Query: 244 caaatgcttgtacaaacatgactgtaatgaccctttctttgttctgcaaaacaaactgaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaatgcttgtacaaacatgactgtaatgaccctttctttgttctgcaaaacaaactgaa 503

                                                                       
Query: 304 gatgcaggcattatccagtttcatgaatggagaaattgaagaacaaagaaattaagaagt 363
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 504 gatgcaggcattatccagtttcatgaatggagaaattgaagaataaagaaattaagaagt 563

                                                                       
Query: 364 ttcctaactgtatgggatcaaaatacataaatcttgaataaacacatatttcttgcttct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcctaactgtatgggatcaaaatacataaatcttgaataaacacatatttcttgcttct 623

                                                                       
Query: 424 agccctgacctttttcttgacttccatgtttattaaccatttagaaaataaccaaggagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agccctgacctttttcttgacttccatgtttattaaccatttagaaaataaccaaggagt 683

                                                                       
Query: 484 aaccaattggatcaagcttgaacctgggatgttgtgctggtgaggcacaatactccctaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 684 aaccaattggatcaagcttgaacctgggatgttgtgctggtgaggcacaatactccctag 743

                                                                       
Query: 544 gcccatgatgagctagacttaccaagatggcagcactaggctctcagcatcccacatatt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcccatgatgagctagacttaccaagatggcagcactaggctctcagcatcccacatatt 803

                                                                       
Query: 604 tcatcccagtgtctatgcacgtctcttgacaccctgccagatttctctgtagcatgagtc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tcatcccagtgtctatgcacgtctcttgacaccctgccagatttctctgtagcatgagtc 863

                                                                   
Query: 664 actctaggctcaaatttttctctctaatcaatttatccatcagcaatttcatgagc 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 actctaggctcaaatttttctctctaatcaatttatccatcagcaatttcatgagc 919


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1119
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1109
Effective search space:   786281
Effective search space used:   786281
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no519_g17.g1 MSMg01no519_g17.g1 CHROMAT_FILE:
MSMg01no519_g17.g1 PHD_FILE: MSMg01no519_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:07 2005
         (584 letters)



>mm_chr16_24345628_24346611
          Length = 984

 Score =  944 bits (488), Expect = 0.0
 Identities = 503/508 (99%)
 Strand = Plus / Minus

                                                                       
Query: 74  aggagcatggcagcacccaggcaggcatggtgcaggagaagctgagcgttctacatcttc 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 aggagcatggcagcacccaggcaggcatggtgcaggagaagctgagcgttctacatcttc 925

                                                                       
Query: 134 atctggaggtcagtaggagactcttttccaggcggctaggactagggtattaaagcccat 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 atctggaggtcagtaggagactcttttccaggcggctaggactagggtattaaagcccat 865

                                                                       
Query: 194 gcccacagtgacacacctactccaacaaggcctcaccttctgatagtgccactccccggg 253
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 864 gcccacagtgacacacctactccaacaaggccccaccttctgatagtgccactccccggg 805

                                                                       
Query: 254 ccaagcatacataaaccatcacagtgttaggtagtacttttatgaaaatattttgttgta 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccaagcatacataaaccatcacagtgttaggtagtacttttatgaaaatattttgttgta 745

                                                                       
Query: 314 gttttaaataaaataaaagtggtcagtgagacccatcttttttattttattgaagctctg 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gttttaaataaaataaaagtggtcagtgagacccatcttttttattttattgaagctctg 685

                                                                       
Query: 374 cctcactacaggttgtatgtactccccgactcttagtgcagacccacagcacagggctga 433
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctcactacaggttgtacgtactccccgactcttagtgcagacccacagcacagggctga 625

                                                                       
Query: 434 gaccctgggctctggaatatgcgtgactgagcagacttcttcttagagaatgaaagggat 493
           ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 624 gaccctgggttctggaatatgcgtgactgagcagacttcttcttagagagtgaaagggat 565

                                                                       
Query: 494 ttattctcccagagcaccttgattagaagactcaggaagaggcaggcgtagcagttagca 553
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttattctccccgagcaccttgattagaagactcaggaagaggcaggcgtagcagttagca 505

                                       
Query: 554 catgctgtttctaactagtccccaaatg 581
           ||||||||||||||||||||||||||||
Sbjct: 504 catgctgtttctaactagtccccaaatg 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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