BAC Information

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BAC

Clone NameMSMg01-519N05
Chromosome16 (Build37)
Map Location 79,618,399 - 79,761,462
singlet/doubletdoublet
Overlap genenone
Upstream gene4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik, LOC621365
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519N05.T7 (MSMg01no519_n05.b1)MSMg01-519N05.TJ (MSMg01no519_n05.g1)
ACCAG591004AG591005
length737742
length of high quality
(start - end)		670 (42 - 711)622 (68 - 689)
definitionCHROMAT_FILE: MSMg01no519_n05.b1 PHD_FILE: MSMg01no519_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:39 2005CHROMAT_FILE: MSMg01no519_n05.g1 PHD_FILE: MSMg01no519_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,618,399 - 79,619,064)(79,760,841 - 79,761,462)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGAAAGAGATAGAAATGGTGAGCTTATATAGCACCAAGCCTCTGAGGTA
ACAGTTACATCAGGGAAATATAGGCCATGCTTACTCTCTCACAGCCTAGT
ATAGCTATGAATCCCTCTCTCAAGCTAAAAGACTACAAGCACCAAATAAA
GAAGAGTCTGATATGATTGTGTATGTTTCTCCACATAGACTCTGTAATAT
GTTTATCTATACCCTGGAGATATAATTGAAGTATCTCTTGTGTTTTATCT
CTAATTTTGCATTAGAATAATGGTAAAAGGTTAAATTTAGTTGTGAAAAT
TAAAGAGTGACAAATGACGTAAATAATGAGTGAATGGAAATAGGCAACCT
CTGGAAATAGGGGGTTGGGAAGACCCTCCAAAACGCACCAGAGATCTGGG
ATGTGAGAGATTACCAGGACTCATAGGGAGGGACCTTAGACAAAATGCCT
GACAGTAGAGAGAGGGAACTTATAGAACCCACCTCCAGCAAGAAGACAGG
GCATCAAGTGAGGGCTGGGGTTGCTATCTCACAATCACACCTCTGACCTA
TAATTGTTCCTGTCTGAAAGAATTACAGGGATGGGAATGGAGAGGAGCAT
GAGGAAAAGAAGGTCCAACAACAAGTCCAAAGTCAGATCCAGCTCAGTGG
GACGTATCAAGGTCTGGTACTATTACTGAGCCTATGG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCCTGATCCAGGGGCCCAGCATGGTATTTGTT
TCAACTCTGTTCTACCTATATTTCACACAGAAAAAGATTAAAGTTTCATT
AAATATATATCAAAAATTTGAAGCATTATAAGACATTGTAAGAGACAAAA
TAGTTACTTGAATCTCTGAAGATTATTATGGAAAGGCCAAATCAATACTG
AAATAGATTCCAAAACCCTTGGTATAGGAGAAAGTGACCTAAAAATAGAG
ATGAAATAAATAAAAATGAAGTGTGATAGACTTCCATAACATTACCTTCT
ACATAAAAGACTTTAAGTCAAGGCTTATCACCTATAAGTTAGAAGGGAAT
GGGAAGTACAAGGCTATATACCACTGAATATGAAGTTTCAGAGATTAAAA
CTAAAATCTCTGAGGAAGTTCATCACAGAAATCAAAGTAGCGAATGACTA
CAGAAATGAAAGTAAATGTGTAGTGAGAGAAACTTCCTCAAGTATCACCA
TTTAATTTCTCTTAAATATTTCACTACAGACAAGTGAAGATTTATTTAGG
AAACACATTAAATCAATACTGAGAGTCAGTACCACATTATTCCTATCTGT
TTCGGCAAATAGAACTTGGTTTAGGTCTTATTCTTTCATGTAAATGAGTC
TTATGTTAACTCACATAGGAATCATTTTTACTGTGCCTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_n05.b1 MSMg01no519_n05.b1 CHROMAT_FILE:
MSMg01no519_n05.b1 PHD_FILE: MSMg01no519_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:39 2005
         (670 letters)



>mm_chr16_79618195_79619264
          Length = 1070

 Score = 1249 bits (646), Expect = 0.0
 Identities = 661/666 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaagagatagaaatggtgagcttatatagcaccaagcctctgaggtaacagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaaagagatagaaatggtgagcttatatagcaccaagcctctgaggtaacagt 264

                                                                       
Query: 65  tacatcagggaaatataggccatgcttactctctcacagcctagtatagctatgaatccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacatcagggaaatataggccatgcttactctctcacagcctagtatagctatgaatccc 324

                                                                       
Query: 125 tctctcaagctaaaagactacaagcaccaaataaagaagagtctgatatgattgtgtatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctctcaagctaaaagactacaagcaccaaataaagaagagtctgatatgattgtgtatg 384

                                                                       
Query: 185 tttctccacatagactctgtaatatgtttatctataccctggagatataattgaagtatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttctccacatagactctgtaatatgtttatctataccctggagatataattgaagtatc 444

                                                                       
Query: 245 tcttgtgttttatctctaattttgcattagaataatggtaaaaggttaaatttagttgtg 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 tcttgtgttttatctctaattttgcattggaataatggtaaaaggttaaatttagttgtg 504

                                                                       
Query: 305 aaaattaaagagtgacaaatgacgtaaataatgagtgaatggaaataggcaacctctgga 364
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 505 aaaattaaagagtgacaaatgacataaataattagtgaatggaaataggcaacctctgga 564

                                                                       
Query: 365 aatagggggttgggaagaccctccaaaacgcaccagagatctgggatgtgagagattacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatagggggttgggaagaccctccaaaacgcaccagagatctgggatgtgagagattacc 624

                                                                       
Query: 425 aggactcatagggagggaccttagacaaaatgcctgacagtagagagagggaacttatag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggactcatagggagggaccttagacaaaatgcctgacagtagagagagggaacttatag 684

                                                                       
Query: 485 aacccacctccagcaagaagacagggcatcaagtgagggctggggttgctatctcacaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aacccacctccagcaagaagacagggcatcaagtgagggctggggttgctatctcacaat 744

                                                                       
Query: 545 cacacctctgacctataattgttcctgtctgaaagaattacagggatgggaatggagagg 604
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cacacctctgacccataattgttcctgtctgaaagaattacagggatgggaatggagagg 804

                                                                       
Query: 605 agcatgaggaaaagaaggtccaacaacaagtccaaagtcagatccagctcagtgggacgt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 805 agcatgaggaaaagaaggtccaacaacaagtccaaagtcagatccagctcagtgggaggt 864

                 
Query: 665 atcaag 670
           ||||||
Sbjct: 865 atcaag 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no519_n05.g1 MSMg01no519_n05.g1 CHROMAT_FILE:
MSMg01no519_n05.g1 PHD_FILE: MSMg01no519_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:39 2005
         (622 letters)



>mm_chr16_79760641_79761662
          Length = 1022

 Score = 1102 bits (570), Expect = 0.0
 Identities = 609/622 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctgatccaggggcccagcatggtatttgtttcaactctgttctacctatatttcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ttcctgatccaggggcccagcatggtatttgtttcaactctgttctacctatatttcaca 763

                                                                       
Query: 61  cagaaaaagattaaagtttcattaaatatatatcaaaaatttgaagcattataagacatt 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 762 cagaaaaagattaaagtttcattaaatatatatcaaaattttgaagcattataagacatt 703

                                                                       
Query: 121 gtaagagacaaaatagttacttgaatctctgaagattattatggaaaggccaaatcaata 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gtaagagacaaaacagttacttgaatctctgaagattattatggaaaggccaaatcaata 643

                                                                       
Query: 181 ctgaaatagattccaaaacccttggtataggagaaagtgacctaaaaatagagatgaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 642 ctgaaatagattccaaaacccttggtataggagaaagtgacctaaaaatagaggtgaaat 583

                                                                       
Query: 241 aaataaaaatgaagtgtgatagacttccataacattaccttctacataaaagactttaag 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 582 aaataaaaatgaagtgtgatagacttccgtaacattaccttctacataaaagactttaag 523

                                                                       
Query: 301 tcaaggcttatcacctataagttagaagggaatgggaagtacaaggctatataccactga 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 522 tcaaggcttatcacctataagttagaagggaatgggaagtacacggctatataccactga 463

                                                                       
Query: 361 atatgaagtttcagagattaaaactaaaatctctgaggaagttcatcacagaaatcaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atatgaagtttcagagattaaaactaaaatctctgaggaagttcatcacagaaatcaaag 403

                                                                       
Query: 421 tagcgaatgactacagaaatgaaagtaaatgtgtagtgagagaaacttcctcaagtatca 480
           ||| ||||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct: 402 tagtgaatggctacagaaatgaaagtaaatgtatagtgagagaaactttctcaaatatca 343

                                                                       
Query: 481 ccatttaatttctcttaaatatttcactacagacaagtgaagatttatttaggaaacaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ccatttaatttctcttaaatatttcactacagacaagtgaagatttatttaggaaacaca 283

                                                                       
Query: 541 ttaaatcaatactgagagtcagtaccacattattcctatctgtttcggcaaatagaactt 600
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 282 ttaaatcaatactgagtgtcagtaccacattattcctatctgtttcggcaaatagagctt 223

                                 
Query: 601 ggtttaggtcttattctttcat 622
           ||||||| ||||||||||||||
Sbjct: 222 ggtttagatcttattctttcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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