Query= MSMg01no519_p10.b1 MSMg01no519_p10.b1 CHROMAT_FILE:
MSMg01no519_p10.b1 PHD_FILE: MSMg01no519_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:51 2005
(440 letters)
>mm_chr16_37981930_37982769
Length = 840
Score = 756 bits (391), Expect = 0.0
Identities = 421/433 (97%), Gaps = 4/433 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcagagtccagtcatttctgtgatcctgtgatcttgagatcctgggtgtgtct 64
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattcttcagagtccagtcatttctgtgatcctgtgatcttgagatccagggtgtgtct 264
Query: 65 gagctcctggaagtcaagcattctctggatgttgcagggttgtgtggggaaccagagccc 124
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 gagctcctggaagtcaagctttctctgggtgttgcagggttgtgtggggaaccagagccc 324
Query: 125 tggatttgctgtgtttccaagaaatacgttgccatttggtttttgtgtgtggtggggtct 184
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 325 tggatttgctgtgtttccaagaaatacgttgccatttgttttttgtgtgtgatggggtct 384
Query: 185 ggagtgcacagctttgctcatgctagtcaaaggatctgccactgagctatatcccagcct 244
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 385 ggagtgcacagctttgctcatgctagtcaaagtatctgccactgagccatatcccagcct 444
Query: 245 tggaaggtttccctttgtttccatgatttgaagctgcctctctcccactttcttctcact 304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggaagttttccctttgtttccatgatttgaagctgcctctctcccactttcttctcact 504
Query: 305 tggttttccatggtctgacattgtctatctctgcttctcagtacagagtatgtctttctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggttttccatggtctgacattgtctatctctgcttctcagtacagagtatgtctttctc 564
Query: 365 cctgattgctagcagtagtagttttttgtttgtttgtttggttggttggttggttttggt 424
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 565 cctgattgctagcagtagtagttttttgtttgtttgtttggttggttggtt----ttggt 620
Query: 425 ttttttgagacgg 437
|||||||||||||
Sbjct: 621 ttttttgagacgg 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_p10.g1 MSMg01no519_p10.g1 CHROMAT_FILE:
MSMg01no519_p10.g1 PHD_FILE: MSMg01no519_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:51 2005
(580 letters)
>mm_chr16_38171083_38172061
Length = 979
Score = 1067 bits (552), Expect = 0.0
Identities = 573/580 (98%), Gaps = 1/580 (0%)
Strand = Plus / Minus
Query: 1 aatgtgaccagaaacagatctttcggtgtttccctggctaagcaaaagcccctacttccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aatgtgaccagaaacagatctttcggtgtttccctggctaagcaaaagcccctacttccc 526
Query: 61 tttctcttctaatccatttccacatgattttccttcccctaataagcagatgaattatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tttctcttctaatccatttccacatgattttccttcccctaataagcagatgaattatca 466
Query: 121 gagggttccataagcacataaacaacacagaaagaggaataaaaaatagaaatgtgcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gagggttccataagcacataaacaacacagaaagaggaataaaaaatagaaatgtgcttg 406
Query: 181 agaactgaagacacgtttactttaagtagaaaatcccttcccctccatttctaaggagct 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agaactaaagacacgtttactttaagtagaaaatcccttcccctccatttctaaggagct 346
Query: 241 tagagtttaagacgggctgctgctatatactcaggttctagacaggcgccagtgcagtga 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 345 tagagtttaagacgggctgctgctatgtactcaggttctagacaggcgccagtgcagtga 286
Query: 301 gctcagaaaaatctgctttcattttaaattgtgtgttggggatgtgggttgggggagaaa 360
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gctcag-aaaatttgctttcattttaaattgtgtgttggggatgtgggttgggggagaaa 227
Query: 361 cccacatgtgcaagaacacaagcccatgtccgtgtgaggaggccagaaaagggtgtgcgg 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 226 cccacatgtgcaagaacacaagcccatgtccatgtgaggaggccagaaaagggtgtgcgg 167
Query: 421 tgtctagctcatcaattccctgagacgtgctctctcactgaatttgaagctaggccggca 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tgtctagctcatcagttccctgagacgtgctctctcactgaatttgaagctaggccggca 107
Query: 481 gagatcaatccccaggaacccatgtgtcccacgatcccacagatctggcctgtaagtata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 gagatcaatccccaggaacccatgtgtcccacgatcccacagatctggcctgtaagtata 47
Query: 541 cgcagccatgtcaagctttaactgcaggctctggacactt 580
||||||||||||||||||||||||| ||||||||||||||
Sbjct: 46 cgcagccatgtcaagctttaactgcgggctctggacactt 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space: 552330
Effective search space used: 552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
