BAC Information

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BAC

Clone NameMSMg01-520E23
Chromosome16 (Build37)
Map Location 79,992,471 - 80,133,635
singlet/doubletdoublet
Overlap gene1700066C05Rik
Upstream genePrss7, EG383172
Downstream geneLOC621365, LOC100039724
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520E23.T7 (MSMg01no520_e23.b1)MSMg01-520E23.TJ (MSMg01no520_e23.g1)
ACCAG591372AG591373
length750775
length of high quality
(start - end)
699 (52 - 750)574 (80 - 653)
definitionCHROMAT_FILE: MSMg01no520_e23.b1 PHD_FILE: MSMg01no520_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:19 2005CHROMAT_FILE: MSMg01no520_e23.g1 PHD_FILE: MSMg01no520_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,132,936 - 80,133,635)(79,992,471 - 79,993,045)
sequence
NNNNACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAAGGCAATAATCACATGAATTACACTGCCACACCTTCT
CATAAATATTAAACAATGTATGGAAGGGTAAGAGAAATGCCCCAGCAGGT
AAAAATACTTCCCATCAATACGCATGACCTGAGGCCAGTTGGGCTTGTTG
TTCTCTGAACCATACACACACACTTTCCACTAGCACACACATACCTGTAT
GCTCAGCCCAGAGCCAACTAAATATATACATAAATGATACATAAATTATT
ATTGTTTGAAAAAAGTTATAACATTATATGAGCCAAATAAGAGATATTTA
TATTTTAATAACTTGGTAATATTTATTTCCTCATCCTAACTTTTATTGTT
TTTGTGTGTCTTCCTGAGTATGTGCTTGCATAGATGTAAGTGTCTATGCA
GAACCCAAAATAGGTTGTTGGAACACAGAATGTGAGTTACGGGCTTTTGC
AGGATACTTAAGTTGATACAGGGATGCTGTGACCAGAACTCTGCTGAGCC
ATTAACCTCTGCATTTCAACAGTTAACTGTGTGCTCATCATAAGAAGGCA
GGATTGACAAAAATTAAGTAAAATTGCACACATTCTTAAACATAATATTT
CATAAACTGTTTTTACAGTAATTGTGCATCTATTGTTTTCATCCTTGATA
GATCTTTTTCAATGCACTAAAACTTTAGTACATAGTATGTGATCATAACT

TTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCTTGTACATTAGAAGCAA
GTTACTATATTTCAAAGCTTCACAATAATTCAGCTTTTGTCAAAACAGAG
GACCCAGAGAACAGGATTAAAGTTCCTTCCCTTTCTTCAAGCCTCACTTT
TCTCAGGGAGAATATGTCCTGCATAATTTATCTTATTACCCTTTTTCATA
TATTCCCTTGCCTCTACTAGATCCCACATTAACCTTTAGACTAATAAAAT
AGAATGAATTGACCATATGGTTTTAAACCAATATTGGTCCATACTATGGG
ACCTTTTCTTCATTTCAAAGTAATCAAATATGACCATGATAAGACAGTAA
ATGTAATTAAAATTACTGGGAAATAAACCTAATAACTCCAATGAAAATAT
TATTAAATCAAAATTAACACATACAAAATACATACCGAAATTGTAAGCAT
TTCTTTAAAATAATACATATACACCCTTTATGAGACTCAATATAAGTTTA
TTAAATTTGATTTATGTATAGTCACACCTCAAATCTGGTAGTCTGGGACT
CACCTCAACATCACTCCAGAGCTGAAACACTCAATCAAGGATTTTCAGAT
TATCTTGCAAAATTCTTCTTCAGTTCAGACACATGGAATAGCAACAAAAA
TGACTCAACAATTAACAAAATATTTCTGAGTTATTTTATCACAAATATGT
ACATTTTAAAGATTTGTGTCTGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_e23.b1 MSMg01no520_e23.b1 CHROMAT_FILE:
MSMg01no520_e23.b1 PHD_FILE: MSMg01no520_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:19 2005
         (699 letters)



>mm_chr16_80132730_80133835
          Length = 1106

 Score = 1226 bits (634), Expect = 0.0
 Identities = 681/700 (97%), Gaps = 7/700 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   attccaaggcaataatcacatgaattacactgccacaccttctcataaatattaaacaat 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 attccaaggcaataatcacatgaattacactgccacaccttctcataaatattaaacaat 847

                                                                       
Query: 67  gtatggaagggtaagagaaatgccccagcaggtaaaaatacttcccatcaatacgcatga 126
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 846 gtatggaagggtaagagaaatgccccagcaggtaaaaatacttcccatcaatacacatga 787

                                                                       
Query: 127 cctgaggccagttgggcttgttgttctctgaaccatacacacacactttccactagcaca 186
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 cctgacgccagttgggcttgttgttctctgaaccatacacacacactttccactagcaca 727

                                                                       
Query: 187 cacatacctgtatgctcagcccagagccaactaaatatatacataaatgatacataaatt 246
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 726 cacatacctgtatgctcagcccagaaccaactaaatatatacataaatgatacataaatt 667

                                                                       
Query: 247 attat---tgtttgaaaaaagttataacattatatgagccaaataagagatatttatatt 303
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 attattaatgtttgaaaaaagttataacattatatgagccaaataagagatatttatatt 607

                                                                       
Query: 304 ttaataacttggtaatatttatttcctcatcctaacttttattgtttttgtgtgtcttcc 363
           |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| 
Sbjct: 606 ttaataacttggtaatatttatttcctcgtcctaacttttattgttcttgcgtgtcttcg 547

                                                                       
Query: 364 tgagtatgtgcttgcatagatgtaagtgtctatgcagaacccaaaataggttgttggaac 423
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 546 tgagtatgtgcttgcatagatgtaagtgtctacgcagaacccaaaataggttgttggacc 487

                                                                       
Query: 424 acagaatgtgagttacgggcttttgcaggatacttaagttgatacagggatgctgtgacc 483
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 486 acagaatgtgagttacgggcttttgcaggatacttaagttgatacagagatgctgtgacc 427

                                                                       
Query: 484 agaactctgctgagccattaacctctgcatttcaacagttaactgtgtgctcatcataag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agaactctgctgagccattaacctctgcatttcaacagttaactgtgtgctcatcataag 367

                                                                       
Query: 544 aaggcaggattgacaaaaattaagtaaaattgcacacattcttaaacataatatttcata 603
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaggcaggattgacaaaaattaaataaaattgcacacattcttaaacataatatttcata 307

                                                                       
Query: 604 aactgtttttacagtaattgtgcatctattgttttcatccttgataga----tctttttc 659
           ||||||||||||||||||| ||||||||||||||||||||||||||||    ||||||||
Sbjct: 306 aactgtttttacagtaattatgcatctattgttttcatccttgatagaactgtctttttc 247

                                                   
Query: 660 aatgcactaaaactttagtacatagtatgtgatcataact 699
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aatgcactaaaactttagtacatagtatgtgatcataact 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1106
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1096
Effective search space:   755144
Effective search space used:   755144
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no520_e23.g1 MSMg01no520_e23.g1 CHROMAT_FILE:
MSMg01no520_e23.g1 PHD_FILE: MSMg01no520_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:19 2005
         (574 letters)



>mm_chr16_79992271_79993245
          Length = 975

 Score = 1089 bits (563), Expect = 0.0
 Identities = 572/575 (99%), Gaps = 1/575 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccttgtacattagaagcaagttactatatttcaaagcttcacaata-attcagctttt 59
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 atccttgtacattagaagcaagttactatatttcaaagcttcacaatacattcagctttt 260

                                                                       
Query: 60  gtcaaaacagaggacccagagaacaggattaaagttccttccctttcttcaagcctcact 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaaaacagaggacccagagaacaggattaaagttccttccctttcttcaagcctcact 320

                                                                       
Query: 120 tttctcagggagaatatgtcctgcataatttatcttattaccctttttcatatattccct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctcagggagaatatgtcctgcataatttatcttattaccctttttcatatattccct 380

                                                                       
Query: 180 tgcctctactagatcccacattaacctttagactaataaaatagaatgaattgaccatat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctctactagatcccacattaacctttagactaataaaatagaatgaattgaccatat 440

                                                                       
Query: 240 ggttttaaaccaatattggtccatactatgggaccttttcttcatttcaaagtaatcaaa 299
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttttaaaccaatattgatccatactatgggaccttttcttcatttcaaagtaatcaaa 500

                                                                       
Query: 300 tatgaccatgataagacagtaaatgtaattaaaattactgggaaataaacctaataactc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgaccatgataagacagtaaatgtaattaaaattactgggaaataaacctaataactc 560

                                                                       
Query: 360 caatgaaaatattattaaatcaaaattaacacatacaaaatacataccgaaattgtaagc 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 caatgaaaatattattaaatcaaaattaacacatacaaaatacataccgaaaatgtaagc 620

                                                                       
Query: 420 atttctttaaaataatacatatacaccctttatgagactcaatataagtttattaaattt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttctttaaaataatacatatacaccctttatgagactcaatataagtttattaaattt 680

                                                                       
Query: 480 gatttatgtatagtcacacctcaaatctggtagtctgggactcacctcaacatcactcca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatttatgtatagtcacacctcaaatctggtagtctgggactcacctcaacatcactcca 740

                                              
Query: 540 gagctgaaacactcaatcaaggattttcagattat 574
           |||||||||||||||||||||||||||||||||||
Sbjct: 741 gagctgaaacactcaatcaaggattttcagattat 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 975
Length adjustment: 10
Effective length of query: 564
Effective length of database: 965
Effective search space:   544260
Effective search space used:   544260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)