BAC Information

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BAC

Clone NameMSMg01-520G16
Chromosome16 (Build37)
Map Location 48,436,702 - 48,600,465
singlet/doubletdoublet
Overlap geneMorc1
Upstream geneLOC628776, EG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023
Downstream geneTrat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520G16.T7 (MSMg01no520_g16.b1)MSMg01-520G16.TJ (MSMg01no520_g16.g1)
ACCAG591453AG591454
length757754
length of high quality
(start - end)		685 (73 - 757)678 (77 - 754)
definitionCHROMAT_FILE: MSMg01no520_g16.b1 PHD_FILE: MSMg01no520_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:27 2005CHROMAT_FILE: MSMg01no520_g16.g1 PHD_FILE: MSMg01no520_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(48,436,702 - 48,437,385)(48,599,993 - 48,600,465)
sequence
NNAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACATAGAGCTTACACTTACTAACAAAAGGCCCATATACATAG
AAATATAAACAAATATTATCTTTAAATGGTAAGCCAGGGAGTGGTGGTAC
ATGCTTTCAACCCCAGCACAGGGGACAGAGGCAGGTAGAACTCTGTGTTT
GAGGCCAGCCCTGTCTACAGAGTGAATGAGTTCCAGGACAGCCAGGACTA
TTTAGAGACACTCTGTCTCAGAAAAAAACAAAGACTAAATCAACCAACCA
ATCAAAAACAACAACAACAAAGCCCACAAACAAACAAAAACCAAAAATAA
AACCAACAAAAAACTTAAAATTAACTGAAAAATGTGTTCTTCCTTTAGCT
TTAAAATATATAGGATCTATTTCAGAATCTTAGCAAGTAGTTTTTTTTAA
GATATCTTAAAACTAAATTTGATTAAAATAGAATTCATCATCTATGTGTT
ACACACTTATACATACTAGTTGTATGTTAGGTAAATATCATTATTGCCTG
TATATTTTCCAAGCATGCTTAGTGTTGGTTATCCCTCCTCCCTCCCTCTC
CTTCTGTATTGTTCTTCCTCCCCTGTCCATAATTGAATCCCTCATCTCCT
CTTAATTGGTGAGCTGTTTAGAGTGGCAGAATGTTTGACTGTATCTGAAA
CCCTACTCTGATTACATACTGGCCTCACTTTTTTCTTCTCCCTTTATTTC
CTCATCN

NAACGATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTGACAGAACTCTTAAGTTTGG
AAATGCTTGAGACAGAAAACAGGTCAGAATATCAAGTATTTATCAAAAAG
GAGGGCAGAGCGTGTTGCTTTGAACTCAGATGATAAATCCATATGCCAGT
CTTTCCTCAAGACCTGATCACCAGAGGGAGAAGTATCTTCAGAAGACAGC
AAGTTAAAGCCAGCCTGATCAAAAGGCCACATGGGAGGATGGAAGAGAGA
GCTTGGCAACAAGGGTCTTTGTTGCCCTTTCAGAAGGCTGGAATTCAGTT
TACATCAGTCACTTGCCAGCTTAACACCATCTATGACTGTAGTTCCAGGG
CATCTGACGCTCCTTCTGACTTCCTCTTCCCCTGAATACATAAGGTGCAC
GAATATAGAAGGCATGTGCACATATAATAAATAAGCACACTGATAATAAA
CAAATAAATATAAAAACATAATCTCAGCACAATTCACTTTGGCTGTGAAG
ACTTCTGATATAGGGCAATACTTTTTTAAAGGTTGTATAGTATCTCATTC
TTTTAAATCTAAACCATCCACATATAGATATTTGCACATGTTTTTAGCAA
ACTATCTTTGCTTCATATATTTACTCTAGCAACCGAAGATTACTGGAGAT
GAAGACAGATACAAGAAAAGAATAACCATTAGAATATTAGAATCATAAAA
TTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_g16.b1 MSMg01no520_g16.b1 CHROMAT_FILE:
MSMg01no520_g16.b1 PHD_FILE: MSMg01no520_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:27 2005
         (685 letters)



>mm_chr16_48436502_48437586
          Length = 1085

 Score = 1315 bits (680), Expect = 0.0
 Identities = 683/684 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttactaacaaaaggcccatatacatagaaatataaacaaatattatctttaaatggtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttactaacaaaaggcccatatacatagaaatataaacaaatattatctttaaatggtaa 260

                                                                       
Query: 61  gccagggagtggtggtacatgctttcaaccccagcacaggggacagaggcaggtagaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccagggagtggtggtacatgctttcaaccccagcacaggggacagaggcaggtagaact 320

                                                                       
Query: 121 ctgtgtttgaggccagccctgtctacagagtgaatgagttccaggacagccaggactatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgtttgaggccagccctgtctacagagtgaatgagttccaggacagccaggactatt 380

                                                                       
Query: 181 tagagacactctgtctcagaaaaaaacaaagactaaatcaaccaaccaatcaaaaacaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagagacactctgtctcagaaaaaaacaaagactaaatcaaccaaccaatcaaaaacaac 440

                                                                       
Query: 241 aacaacaaagcccacaaacaaacaaaaaccaaaaataaaaccaacaaaaaacttaaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaacaaagcccacaaacaaacaaaaaccaaaaataaaaccaacaaaaaacttaaaatt 500

                                                                       
Query: 301 aactgaaaaatgtgttcttcctttagctttaaaatatataggatctatttcagaatctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactgaaaaatgtgttcttcctttagctttaaaatatataggatctatttcagaatctta 560

                                                                       
Query: 361 gcaagtagttttttttaagatatcttaaaactaaatttgattaaaatagaattcatcatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaagtagttttttttaagatatcttaaaactaaatttgattaaaatagaattcatcatc 620

                                                                       
Query: 421 tatgtgttacacacttatacatactagttgtatgttaggtaaatatcattattgcctgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgtgttacacacttatacatactagttgtatgttaggtaaatatcattattgcctgta 680

                                                                       
Query: 481 tattttccaagcatgcttagtgttggttatccctcctccctccctctccttctgtattgt 540
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattttccaagcatacttagtgttggttatccctcctccctccctctccttctgtattgt 740

                                                                       
Query: 541 tcttcctcccctgtccataattgaatccctcatctcctcttaattggtgagctgtttaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcttcctcccctgtccataattgaatccctcatctcctcttaattggtgagctgtttaga 800

                                                                       
Query: 601 gtggcagaatgtttgactgtatctgaaaccctactctgattacatactggcctcactttt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtggcagaatgtttgactgtatctgaaaccctactctgattacatactggcctcactttt 860

                                   
Query: 661 ttcttctccctttatttcctcatc 684
           ||||||||||||||||||||||||
Sbjct: 861 ttcttctccctttatttcctcatc 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no520_g16.g1 MSMg01no520_g16.g1 CHROMAT_FILE:
MSMg01no520_g16.g1 PHD_FILE: MSMg01no520_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:28 2005
         (678 letters)



>mm_chr16_48599388_48600465
          Length = 1078

 Score =  907 bits (469), Expect = 0.0
 Identities = 472/473 (99%)
 Strand = Plus / Minus

                                                                        
Query: 206  tgggaggatggaagagagagcttggcaacaagggtctttgttgccctttcagaaggctgg 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 tgggaggatggaagagagagcttggcaacaagggtctttgttgccctttcagaaggctgg 1019

                                                                        
Query: 266  aattcagtttacatcagtcacttgccagcttaacaccatctatgactgtagttccagggc 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 aattcagtttacatcagtcacttgccagcttaacaccatctatgactgtagttccagggc 959

                                                                        
Query: 326  atctgacgctccttctgacttcctcttcccctgaatacataaggtgcacgaatatagaag 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958  atctgacgctccttctgacttcctcttcccctgaatacataaggtgcacgaatatagaag 899

                                                                        
Query: 386  gcatgtgcacatataataaataagcacactgataataaacaaataaatataaaaacataa 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898  gcatgtgcacatataataaataagcacactgataataaacaaataaatataaaaacataa 839

                                                                        
Query: 446  tctcagcacaattcactttggctgtgaagacttctgatatagggcaatacttttttaaag 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838  tctcagcacaattcactttggctgtgaagacttctgatatagggcaatacttttttaaag 779

                                                                        
Query: 506  gttgtatagtatctcattcttttaaatctaaaccatccacatatagatatttgcacatgt 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778  gttgtatagtatctcattcttttaaatctaaaccatccacatatagatatttgcacatgt 719

                                                                        
Query: 566  ttttagcaaactatctttgcttcatatatttactctagcaaccgaagattactggagatg 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718  ttttagcaaactatctttgcttcatatatttactctagcaaccgaagattactggagatg 659

                                                                 
Query: 626  aagacagatacaagaaaagaataaccattagaatattagaatcataaaatttc 678
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 658  aagacagatacaagaaaagaataaccattagaatattagaattataaaatttc 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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