BAC Information

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BAC

Clone NameMSMg01-520O07
Chromosome16 (Build37)
Map Location 36,900,082 - 37,057,899
singlet/doubletdoublet
Overlap geneGolgb1, Hcls1, Fbxo40, LOC100043252, Polq
Upstream geneLOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101
Downstream geneStxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520O07.T7 (MSMg01no520_o07.b1)MSMg01-520O07.TJ (MSMg01no520_o07.g1)
ACCAG591817AG591818
length736730
length of high quality
(start - end)		661 (76 - 736)651 (80 - 730)
definitionCHROMAT_FILE: MSMg01no520_o07.b1 PHD_FILE: MSMg01no520_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:04 2005CHROMAT_FILE: MSMg01no520_o07.g1 PHD_FILE: MSMg01no520_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,057,239 - 37,057,899)(36,900,082 - 36,900,732)
sequence
GAGGTGGCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGGATGTTGACACAAAAGATTTCAAGTTCATGGCTA
GCCTGGGCAACTTAACACGGTCTTGTCTGGAGGGCCAAGTAGGACAGAGA
TTATACATTAAGAACACTGTGCTTCAAATGCTCAAAGTCAGAGAAGGACA
GTTTTGAACATAAAGGAATGCTTTGCTTACAAATCTCAGTTAAGGATAAG
TTCGTCCAACTAAGACAAATCTAGGAATACCTCAGCAGTGAAAGTCAGAA
TTTCAACACATAAGGATATGTACAGCACCTTTCTACATTCACCCTCCACA
GAAGCAAGGGCAAAGCTGCAAACTTAATGTACAGTGCTATATGCTGAGAC
ACAGACAAAGGAAAGGACGGAAAGGAATCACACAGCTGCTGCTCAGCCAG
TAGGTAGAAGGTAGGGTACAGGGCACCACCAAAATCTTCAAGAACCCGAG
CATGCAGTGTGCAAATACAATTCACCACAAGTTTCTCAATTTAAAAATGG
AACAGCAAAGCAGAGCCAACTTGGAGAGAAAGAAACATAGCAACTGTCAT
AAATATACATCAAATATAAGAGCAAACTTATCAGTCATTGCAATCAATAT
GAATAGAACTGAATCATCTATTCAAAGAAAAAGATTTTCAATTTGGTTCA
GATGCAAAACTCAACTACTGTGAAGAATGGTGCACA

GGAGGCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATACATGCAAACAAACAGTG
TGTGTTCACAACCTCCTGCCATCCTTCCTCAGACTTCCTCTTATCGCCCT
CACCCTTCCAGCTCCCTAAGAATCACTGCTCTTTCTGAGGCTTTTTCACA
CTAGTTCCGGAAGTGGAGATGGACCGTGCAGTTGTCTGGCTCTCTGCACT
TAGCGCAGTGTCCCCGCTCAGTCCACTGTTATGCAGATAGCAGGACTGCA
TTTTGCTTTGTGACTCTGCAACGTTCCACGTGCTTATTTCTCCTTTGAAG
GAAGTAGTTTCCTGAGGTGCCCTTCGATCCAAACAGTAAAAAATGTAATT
GGCACCATAAGCTTTATTAGGTAGCTGAACTAGTGAAGTTCAATGTGGTG
TATCTGTAGGGGTTTCTGACTCGAGCAGACCTCGCTCCTGTGTGCTTGTC
TTGTTTTCCTCAGATATGCATGTTTGTTTTCTCTTCCTTAGATCAACTCC
AGCAAAAATCTAAAGAAATTAGCCAATTTGTAAATAAGCTGAACTTGCAA
AAAAATGAAACAGCATCTCAGACTTCTTTACCAGATGTTAATAATGAGGG
CGACCAGGTAATTAATGTGAATTTCTCTGTGATCTATATGTATTTGCTGT
GCTGAAGGGCTCTCTCTAATGAGTATTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_o07.b1 MSMg01no520_o07.b1 CHROMAT_FILE:
MSMg01no520_o07.b1 PHD_FILE: MSMg01no520_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:04 2005
         (661 letters)



>mm_chr16_37057194_37058254
          Length = 1061

 Score = 1270 bits (657), Expect = 0.0
 Identities = 660/661 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaaagatttcaagttcatggctagcctgggcaacttaacacggtcttgtctggagggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 acaaaagatttcaagttcatggctagcctgggcaacttaacacggtcttgtctggagggc 647

                                                                       
Query: 61  caagtaggacagagattatacattaagaacactgtgcttcaaatgctcaaagtcagagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 caagtaggacagagattatacattaagaacactgtgcttcaaatgctcaaagtcagagaa 587

                                                                       
Query: 121 ggacagttttgaacataaaggaatgctttgcttacaaatctcagttaaggataagttcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ggacagttttgaacataaaggaatgctttgcttacaaatctcagttaaggataagttcgt 527

                                                                       
Query: 181 ccaactaagacaaatctaggaatacctcagcagtgaaagtcagaatttcaacacataagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ccaactaagacaaatctaggaatacctcagcagtgaaagtcagaatttcaacacataagg 467

                                                                       
Query: 241 atatgtacagcacctttctacattcaccctccacagaagcaagggcaaagctgcaaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atatgtacagcacctttctacattcaccctccacagaagcaagggcaaagctgcaaactt 407

                                                                       
Query: 301 aatgtacagtgctatatgctgagacacagacaaaggaaaggacggaaaggaatcacacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aatgtacagtgctatatgctgagacacagacaaaggaaaggacggaaaggaatcacacag 347

                                                                       
Query: 361 ctgctgctcagccagtaggtagaaggtagggtacagggcaccaccaaaatcttcaagaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctgctgctcagccagtaggtagaaggtagggtacagggcaccaccaaaatcttcaagaac 287

                                                                       
Query: 421 ccgagcatgcagtgtgcaaatacaattcaccacaagtttctcaatttaaaaatggaacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ccgagcatgcagtgtgcaaatacaattcaccacaagtttctcaatttaaaaatggaacag 227

                                                                       
Query: 481 caaagcagagccaacttggagagaaagaaacatagcaactgtcataaatatacatcaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 caaagcagagccaacttggagagaaagaaacatagcaactgtcataaatatacatcaaat 167

                                                                       
Query: 541 ataagagcaaacttatcagtcattgcaatcaatatgaatagaactgaatcatctattcaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ataagagcaaacttatcagtcattgcaatcaatatgaatagaactgaatcatctattcaa 107

                                                                       
Query: 601 agaaaaagattttcaatttggttcagatgcaaaactcaactactgtgaagaatggtgcac 660
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 106 agaaaaagattttcaatttggttcagatgcaaaattcaactactgtgaagaatggtgcac 47

            
Query: 661 a 661
           |
Sbjct: 46  a 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no520_o07.g1 MSMg01no520_o07.g1 CHROMAT_FILE:
MSMg01no520_o07.g1 PHD_FILE: MSMg01no520_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:04 2005
         (651 letters)



>mm_chr16_36899882_36900932
          Length = 1051

 Score = 1220 bits (631), Expect = 0.0
 Identities = 646/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacatgcaaacaaacagtgtgtgttcacaacctcctgccatccttcctcagacttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacatgcaaacaaacagtgtgtgttcacaacctcctgccatccttcctcagacttcct 260

                                                                       
Query: 61  cttatcgccctcacccttccagctccctaagaatcactgctctttctgaggctttttcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttatcgccctcacccttccagctccctaagaatcactgctctttctgaggctttttcac 320

                                                                       
Query: 121 actagttccggaagtggagatggaccgtgcagttgtctggctctctgcacttagcgcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actagttccggaagtggagatggaccgtgcagttgtctggctctctgcacttagcgcagt 380

                                                                       
Query: 181 gtccccgctcagtccactgttatgcagatagcaggactgcattttgctttgtgactctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccccgctcagtccactgttatgcagatagcaggactgcattttgctttgtgactctgc 440

                                                                       
Query: 241 aacgttccacgtgcttatttctcctttgaaggaagtagtttcctgaggtgcccttcgatc 300
           || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggttccatgtgcttatttctcctttgaaggaagtagtttcctgaggtgcccttcgatc 500

                                                                       
Query: 301 caaacagtaaaaaatgtaattggcaccataagctttattaggtagctgaactagtgaagt 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 caaacagtaaaaaatgtaattggcaccataagcttaattaggtagctgaactagtgaagt 560

                                                                       
Query: 361 tcaatgtggtgtatctgtaggggtttctgactcgagcagacctcgctcctgtgtgcttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaatgtggtgtatctgtaggggtttctgactcgagcagacctcgctcctgtgtgcttgt 620

                                                                       
Query: 421 cttgttttcctcagatatgcatgtttgttttctcttccttagatcaactccagcaaaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttgttttcctcagatatgcatgtttgttttctcttccttagatcaactccagcaaaaat 680

                                                                       
Query: 481 ctaaagaaattagccaatttgtaaataagctgaacttgcaaaaaaatgaaacagcatctc 540
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 681 ctaaagaaattagccaatttgtaaataagccaaacttgcaaaaaaatgaaacagcatctc 740

                                                                       
Query: 541 agacttctttaccagatgttaataatgagggcgaccaggtaattaatgtgaatttctctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agacttctttaccagatgttaataatgagggcgaccaggtaattaatgtgaatttctctg 800

                                                              
Query: 601 tgatctatatgtatttgctgtgctgaagggctctctctaatgagtattgca 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgatctatatgtatttgctgtgctgaagggctctctctaatgagtattgca 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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