Query= MSMg01no523_k04.b1 MSMg01no523_k04.b1 CHROMAT_FILE:
MSMg01no523_k04.b1 PHD_FILE: MSMg01no523_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:37 2005
(477 letters)
>mm_chr16_96568990_96569866
Length = 877
Score = 783 bits (405), Expect = 0.0
Identities = 437/457 (95%), Gaps = 16/457 (3%)
Strand = Plus / Minus
Query: 20 tccaagcgtgtttaaacatctcggctgctgacacgccaagggttgaacagctcagggttt 79
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tccaagcatgtttaaacatcttggctgctgacacgccaagggttgaacagctcagggttt 503
Query: 80 cacgcgcaggagtagagcccagtgccccagatcccaaggcagtgactcctcagctctgtt 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cacgcgcaggagtagagcccagtgccccagatcccaaggcagtgactcctcagctctgtt 443
Query: 140 tggaatcacagcataccacaagttgtgtggagcagaggaagaataatgtccaaaggagtc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tggaatcacagcataccacaagttgtgtggagcagaggaagaataatgtccaaaggagtc 383
Query: 200 taacacctcgtcctacttgctcacagcctgataaggtggcaataggtccttcagtactaa 259
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taacaccttgtcctacttgctcacagcctgataaggtggcaataggtccttcagtactaa 323
Query: 260 tgttttattcatgaatgtcacctatggctcaggattagtctcaatttggaatcttcttca 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgttttattcatgaatgtcacctatggctcaggattagtctcaatttggaatcttcttca 263
Query: 320 ttgctcaagaggacttcagttcatgccagaagcagcgtagcgttctctctctctctttct 379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttgctcaagaggacttcagttcatgccagaagcagcgtagcgttctctctctctc----- 208
Query: 380 ctctctcagtctctctctctcactctgtgtgt----gtgtgtgtatgtgtgtgtgtattt 435
||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 207 -------agtctctctctctcactctgtgtgtatgtgtgtgtgtatgtgtgtgtgtattt 155
Query: 436 ttgtgtggtgtgtgtgtgagtgtgtgtatgtgtgtgt 472
||||||||||||||||||||||||||||||| |||||
Sbjct: 154 ttgtgtggtgtgtgtgtgagtgtgtgtatgtatgtgt 118
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_k04.g1 MSMg01no523_k04.g1 CHROMAT_FILE:
MSMg01no523_k04.g1 PHD_FILE: MSMg01no523_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:37 2005
(609 letters)
>mm_chr16_96423360_96424368
Length = 1009
Score = 1143 bits (591), Expect = 0.0
Identities = 606/613 (98%), Gaps = 4/613 (0%)
Strand = Plus / Plus
Query: 1 caatcacagagattgagaacacagaacttccgtggctgttgatgggtttacataaggagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 caatcacagagattgagaacacagaacttccgtggctgttgatgggtttacataaggagc 256
Query: 61 acacccatgtttcttcagtgctgg----gttcacacctggggcctcacccttgctgtgta 116
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 257 acacccatgtttcttcagtgctggctgggttcacacctggggcctcacccttgctgtgta 316
Query: 117 agcatgttaacttaccactgtgctgcatcctgggagttcgcacttgggtcttttagattg 176
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 317 agcatgttaacttaccactgtgctgcatcctgggagttcgcgcttgggtcttttagattg 376
Query: 177 gaaataaattttcaaggataggtgatctgatgggctggttttgaagtgggtttcaaacat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaaataaattttcaaggataggtgatctgatgggctggttttgaagtgggtttcaaacat 436
Query: 237 tagtgctcagtgttgaaaacttttcacagtcacttacttatttttagttttaggtgcatg 296
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 437 tagtgctcagtgttgaaaacttttcacagtcacttacttacttttagttttaggtgcatg 496
Query: 297 gatattttgcatacatatatgttactatatcacacatatgcctgatgcacatagaggcca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gatattttgcatacatatatgttactatatcacacatatgcctgatgcacatagaggcca 556
Query: 357 gaagaggtgtcagatcccctgggactggagtaacagatggttgtgagccaccactatgtg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaagaggtgtcagatcccctgggactggagtaacagatggttgtgagccaccactatgtg 616
Query: 417 ggtgctgggaattaaaaccaggtcctctgcaagagcagccagtactcctgagccacctct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggtgctgggaattaaaaccaggtcctctgcaagagcagccagtactcctgagccacctct 676
Query: 477 ccagcctaagtcttttatctgttctatatggctgtttgtattcttcagacaatggaaata 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ccagcctaagtcttttatctgttctatatggctgtttgtattcttcagacaatggaaata 736
Query: 537 aacccacagatttctttggtttgtttattgtttatcgtcctgcatttttgaagtctggga 596
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 737 aacccacagatttctttggtttgtttattgtttattgtcctgcatttttgaagtctggga 796
Query: 597 gtttgttttagcc 609
|||||||||||||
Sbjct: 797 gtttgttttagcc 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
