BAC Information

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BAC

Clone NameMSMg01-524C02
Chromosome16 (Build37)
Map Location 62,207,882 - 62,208,603
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524C02.T7 (MSMg01no524_c02.b1)MSMg01-524C02.TJ (MSMg01no524_c02.g1)
ACCAG594281AG594282
length765767
length of high quality
(start - end)		736 (25 - 760)666 (62 - 727)
definitionCHROMAT_FILE: MSMg01no524_c02.b1 PHD_FILE: MSMg01no524_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:18 2005CHROMAT_FILE: MSMg01no524_c02.g1 PHD_FILE: MSMg01no524_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCTCAACAC
TTTATTTTATGTTCCATGAATTCTTAAGTTTACTCTGTGAATCTGTACTA
ATTAAAATTTTCTACAATATTAAGGAAATATTTGAATACAATACTAGGAA
ATATAAAGTTGTTATTAAAATATTCCATTTTGAAAACAACTTACCAACTG
AGAAGTAAGAATAGAACAATATACAGAATGTTCAATAGGATAATATACAG
AATGCTTCAATAAATATGTTAAAATAATCTCTATATATCAGTGTCAGTAA
ATAAACAATAACAACTTAAATATTCAAAATTTGACCTTTTAATGTGTAAG
TAGTTCTGAAGCTGGGGAAGGATGTTAAGTAGTCTCTGGACAGTTCAGTC
TAAGGAGAATGGGAAGAAGCTAGAAACTGTCCGTGGTGCTGAAACAAGGG
CTGACACATAAGCATTTTCTTCTCTGTAGTCTTTAACACTTCTTTATACT
ACATCCATTTCATGATATATTTTTTGAGCTCAGATATCATATGTTATAAT
TACACAAACCCACTGCATATTTTCTAAGATTATCCCCCTTTCTGTCACAC
TGTATAAAATAAGACCTTAATTAATATGTTACAGTTATTCAGTATTGAAT
ACCATAAAGTACTTAAGACCCTTAGATGTTTTAAGATTATTGCTGATACA
GGAAAGTAACCATTAATTAATAAAATTCCAAAATTTATATACATTTCTAC
TATAGTAAAGAAGCA

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAAGGGCTGACAGGCAGGAATGAGTGGATGGATGTGGGAA
CACCCACATAGAAGCAGTGGGTACGGGGGTGGAATATGTGGTTTCCAGAG
GGGAAACCAGGAACGAGGAAAACATTTGAAAAATGCAAATAAAAAATTCA
ATAAAGAAGAATGTGAAAGAATACCTAAAGAACACAAGAACACATTCTCT
TAGAATAAAGAAAGAAATTAAAGACTTGTTAGCATTTAATGAAAAAATAA
GGCACATCATACCAACACTTATGGGATACAAGGAAAGCAGAGCTAAGGGG
AAAATTCATAGCTCTGAGTGCCCCCAAAAAGAAACTTCAGAAAGCATACA
CTAGTAGCTTTACAGAACACCTGAAAACTCTACAACAAAAATTAGCAAAT
ATACCCAAGAGGAGTAGACAGCAGGAAATAATCAAACTCAGGGCTAAAAT
CAACCAAGTAGAAACAAACAAACAAACAAAAATTATACAAAGAATCAACC
AAACCAAGAGCTGGTTTTTGAGAAAATCAATAACCCTTACCCAGACTAAT
CAAAGGACACAGAGACAGTATCCAAATTAACAAAAACAGAAATAAAAAGG
GAGACATAACAATGGAAACCAAGGAAACTCAAAAAATCATCATATCCTAC
TACAAGAGCCTATACTCAACAAAACTAGAAAATCTCGATGAAATGGACAA
TTTTCTAGGCAGATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_c02.b1 MSMg01no524_c02.b1 CHROMAT_FILE:
MSMg01no524_c02.b1 PHD_FILE: MSMg01no524_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:18 2005
         (736 letters)



>mm_chr16_62207669_62208803
          Length = 1135

 Score = 1305 bits (675), Expect = 0.0
 Identities = 711/723 (98%), Gaps = 1/723 (0%)
 Strand = Plus / Minus

                                                                       
Query: 14  gaattctcaacactttattttatgttccatgaattcttaagtttactctgtgaatctgta 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 gaattctcaacactttattttatgttccatgaattcttaagtttactctgtgaatctgta 876

                                                                       
Query: 74  ctaattaaaattttctacaatattaaggaaatatttgaatacaatactaggaaatataaa 133
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ctaattaaacttttctacaatattaaggaaatatttgaatacaatactaggaaatataaa 816

                                                                       
Query: 134 gttgttattaaaatattccattttgaaaacaacttaccaactgagaagtaagaatagaac 193
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 815 gttgttattaaaatattccattttgaaaacaacttaccaactgagaggtaaaaatagaac 756

                                                                       
Query: 194 aatatacagaatgttcaataggataatatacagaatgcttcaataaatatgttaaaataa 253
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aatatacagaatgttcaacaggataatatacagaatgcttcaataaatatgttaaaataa 696

                                                                       
Query: 254 tctctatatatcagtgtcagtaaataaacaataacaacttaaatattcaaaatttgacct 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || 
Sbjct: 695 tctctatatatcagtgtcagtaaataaacaataacaacttaaatattcaaagtttggcc- 637

                                                                       
Query: 314 tttaatgtgtaagtagttctgaagctggggaaggatgttaagtagtctctggacagttca 373
           ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 636 tttcatgtgtaagtagttctgaagctggggaagtatgttaagtagtctctggacagttca 577

                                                                       
Query: 374 gtctaaggagaatgggaagaagctagaaactgtccgtggtgctgaaacaagggctgacac 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gtctaaggagaatgggaagaagctagaaactgtccgtggtgctgaaacaagggctgacac 517

                                                                       
Query: 434 ataagcattttcttctctgtagtctttaacacttctttatactacatccatttcatgata 493
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 516 ataagcattttcttctctgtagtctttaatacttctttatactacatccatttcatgata 457

                                                                       
Query: 494 tattttttgagctcagatatcatatgttataattacacaaacccactgcatattttctaa 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tattttttgagctcagatatcatatgttataattacacaaacccactgcatattttctaa 397

                                                                       
Query: 554 gattatccccctttctgtcacactgtataaaataagaccttaattaatatgttacagtta 613
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gattatccccctttctgtcacactgtataaaataagaccttaattaatatgttacagtta 337

                                                                       
Query: 614 ttcagtattgaataccataaagtacttaagacccttagatgttttaagattattgctgat 673
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 336 ttcagtattgaataccataaagtacttaaaacccttagatgttttaagattattgctgat 277

                                                                       
Query: 674 acaggaaagtaaccattaattaataaaattccaaaatttatatacatttctactatagta 733
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 276 acaggaaagtaaccattaattaataaaattccaaaatttatatacattcctactatagta 217

              
Query: 734 aag 736
           |||
Sbjct: 216 aag 214


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 1135
Length adjustment: 10
Effective length of query: 726
Effective length of database: 1125
Effective search space:   816750
Effective search space used:   816750
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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