BAC Information

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BAC

Clone NameMSMg01-524G06
Chromosome16 (Build37)
Map Location 81,366,413 - 81,367,062
singlet/doubletsinglet
Overlap geneNcam2
Upstream geneLOC621365, LOC100039724
Downstream geneLOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524G06.T7 (MSMg01no524_g06.b1)MSMg01-524G06.TJ (MSMg01no524_g06.g1)
ACCAG594479AG594480
length772771
length of high quality
(start - end)
639 (35 - 673)650 (64 - 713)
definitionCHROMAT_FILE: MSMg01no524_g06.b1 PHD_FILE: MSMg01no524_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:39 2005CHROMAT_FILE: MSMg01no524_g06.g1 PHD_FILE: MSMg01no524_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGACT
TTTTGGATAATATCCACTTATCAGTGAATACATACTATGCATGTCCTCTT
GGGTCTGGGTTACCTCGCTCAGGATATTTTCTAGATTCATCCATTTGCCT
GCAAAATGTATGGTGTCCTCATTTTTACATGTATATACTTCAAAGTGCTG
AGAATAAGTGTATGGGTACTCAATATTAAACGATTCATCTACCCAGGCTC
CAGTGACCATTGTAAAGGAGGAGAAAGAAAGAAAATCAGAGCCAGAGGAT
TGGGAGGGATGCTGTGAGTGTTGTTCTCAGGATAGAGAATGGCTATCATA
CTCAACAACTGTGTACTGAAGTGCTGTTGACAATGGATAGTTTCTGTGGA
AGGGAGAAGTATCCTTCAGGTGGATGTGAGCTCTGGTTTCTTTTCCTATG
CTCCAGTGGATGGCTCCACAGACATGCTCACATGGACAGCACTATCTATA
CTTGGATTATTCAAAAATAAAACAAGAGACAAAAACATCATGAGGTTAAA
AGCAGAGTACTTGGGTTTATGGATCGAGTTGGAAGGAGGATAGGGCATAT
ATACGATAATTTTAAATTACATAAATATATAAAAAATCTCAAAAATAAAG
AANAACGTAAAAAAAGATGAATGTGGGACAAGGGTTTACAAGAAGCAGGT
AGTTGATGAGAATGGGAGAAATGTAAAATGGTGGGACATAANGCTAATAA
ATATATTATTTGTGTGAAAAAA
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAAATTAGAAAACAACATACCAGGAAGAAAGTTAAAT
TTTCTGTCATATTTCATTAGTGGCTTAACTGGCTTTTTATTGTAAGTTAA
TGGCTTTATTTTATGTTTTAGTTGTAAGAACCAGTGAACATAGAAACAAA
TAGTGAGTCAGAAAAAAAGATCACCCTGACAAAATTATGTTCAACAAAAG
AACTTGATGCTAACTGTGGAATATGAAGCTAAATGCACTGAAAATGACAT
GTTTTTAAACAATGTGTTCCATGTTTAAAGATGAGGTTATCTTTTTCCTC
CTAGGGCATCATCAGGCTTAGTAGCAAGGACACTTTAATATTACATTTTG
GTTATACCTTTCTACTCTATATTCTGTTTTCTTCTTTGTGTGTTGTTCAG
CAGTTTTATAATTTACATAATGACTGTTGTCATTTTCACCTCTATTCTCT
TCCCTTGTATCTTCTTTGCAGACTCCCACGCAGAGCATCTTTTAATCAAT
GAGATGCTCCATGTCTTTCAACTTCAACTCTCTAAGAGAGCATTTTGATA
CCTCTCAGGGAAATAATATCAACCTTACATTGATGTTTATAATGGCAAAT
GTACTCTTTCCTAATCACAGGTTTTAAATATTTAGATATTTCTTCTTTAG
CTATTTCTTCTTTTGCAATGCATATATGTAAATAATGAAATTAATTTTCT
AGGTAATACTAATTTTCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_g06.g1 MSMg01no524_g06.g1 CHROMAT_FILE:
MSMg01no524_g06.g1 PHD_FILE: MSMg01no524_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:39 2005
         (650 letters)



>mm_chr16_81366213_81367262
          Length = 1050

 Score = 1226 bits (634), Expect = 0.0
 Identities = 646/650 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaattagaaaacaacataccaggaagaaagttaaattttctgtcatatttcattagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaattagaaaacaacataccaggaagaaagttaaattttctgtcatatttcattagtgg 260

                                                                       
Query: 61  cttaactggctttttattgtaagttaatggctttattttatgttttagttgtaagaacca 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 cttaactggctttttattgtaagttaatggttttattttatgttttagttgtaagaacca 320

                                                                       
Query: 121 gtgaacatagaaacaaatagtgagtcagaaaaaaagatcaccctgacaaaattatgttca 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 321 gtgaacatagaaacaaatagtgagtcagataaaaagatcaccctgacaaaattatattca 380

                                                                       
Query: 181 acaaaagaacttgatgctaactgtggaatatgaagctaaatgcactgaaaatgacatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaaagaacttgatgctaactgtggaatatgaagctaaatgcactgaaaatgacatgtt 440

                                                                       
Query: 241 tttaaacaatgtgttccatgtttaaagatgaggttatctttttcctcctagggcatcatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaacaatgtgttccatgtttaaagatgaggttatctttttcctcctagggcatcatc 500

                                                                       
Query: 301 aggcttagtagcaaggacactttaatattacattttggttatacctttctactctatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcttagtagcaaggacactttaatattacattttggttatacctttctactctatatt 560

                                                                       
Query: 361 ctgttttcttctttgtgtgttgttcagcagttttataatttacataatgactgttgtcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgttttcttctttgtgtgttgttcagcagttttataatttacataatgactgttgtcat 620

                                                                       
Query: 421 tttcacctctattctcttcccttgtatcttctttgcagactcccacgcagagcatctttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcacctctattctcttcccttgtatcttctttgcagactcccacgcagagcatctttt 680

                                                                       
Query: 481 aatcaatgagatgctccatgtctttcaacttcaactctctaagagagcattttgatacct 540
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatcaatgagatgctccctgtctttcaacttcaactctctaagagagcattttgatacct 740

                                                                       
Query: 541 ctcagggaaataatatcaaccttacattgatgtttataatggcaaatgtactctttccta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcagggaaataatatcaaccttacattgatgtttataatggcaaatgtactctttccta 800

                                                             
Query: 601 atcacaggttttaaatatttagatatttcttctttagctatttcttcttt 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atcacaggttttaaatatttagatatttcttctttagctatttcttcttt 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)