BAC Information

Click to search

BAC

Clone NameMSMg01-525C09
Chromosome16 (Build37)
Map Location 56,117,799 - 56,118,304
singlet/doubletsinglet
Overlap geneSenp7
Upstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1
Downstream geneImpg2, LOC672835, Abi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525C09.T7 (MSMg01no525_c09.b1)MSMg01-525C09.TJ (MSMg01no525_c09.g1)
ACCAG595056AG595057
length725734
length of high quality
(start - end)
498 (71 - 568)555 (72 - 626)
definitionCHROMAT_FILE: MSMg01no525_c09.b1 PHD_FILE: MSMg01no525_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:39 2005CHROMAT_FILE: MSMg01no525_c09.g1 PHD_FILE: MSMg01no525_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCTTGTTCCCATGTAAACCCAGTCCAAAGCCTGCGGCAGGAATAGCATGA
GCCCTAGAAAAAAAGTTCCGGATGGCTTTTGCTATTATCCATTATAGGGA
TAGACTGAACCTATCACGCAGTCTTCTGACTGACTGCATATTCACCCCCA
GAACAATGCTGCAGTCAGCGGTATTCAGAAGCATCTTTTGCAGTGGTTGG
TAGTGACTGCAAAGACTCAGAACTGGTCACAGTGCTGGAAATAAATATCT
GCTAAACGCCATCCATAAATGGGACATCTAAAACATCCCCTCCGAGGCTC
CAGGAGGGCAGTGGAAGAAGACTAGAAAGAACGTAAAGGCATGAGGAAAG
AGGGAGAGAGATCTGGAACAGTGACTTCTGAGTATCACATGGTTGCTGTG
CTCTTCAACTCAAAGCAGCAACCTCCACAAGCTTGAGCTCCTCCACAAGC
TTGAGGTGAGGAGAGGATCGTGGAAGGCCCTACCTTCCAAGGACTAATCC
TGCGGATTAACAGACAGCGTCGGACAGACAAGGGAAAGACACTCTCTTCA
GAGGAGTATCCACGGGTAAGGTGTCTATGCCCCTGTAAACGGATTCTCAC
GCCTGTCCCTCATGAATTTCACTTGGTCCCAAAATAAATGTGTCGCACAA
CGACCACGATGGCCAAGACGATAAN
TGCATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTGAGTTTTTTTGTTGTTGTTGTTTCAA
ATGTATAATTTAAGAAAAATAATAAATACACCATTTAGACAAATTCCGAG
TATAAATTCATTGGAAAAATATGAGTGTATTGTATTCTGTACTTCACTAA
TCACTGCCACTGCCAATAAATGAAAGCAAGAGTAAGTTTACCCTCTGTGT
ATGTCCAACTCAGCTCCTGCTGACCAAAGCTTATAAATGTCTAGAAATTT
TCAACCAGGAAAATAAATGTGAACCACATGTGGAAATAAGCTCGCCTATA
AAGAGACGTGTACTGGCATGTCCTTTAGAAAGAATCAAACATGCTGGGGC
GGTGCTGGTGCATGTCTATATTCCCAGCACTCGAGAGGCAGAGGTAGGGG
GATCTCTGTGACCTTTAGGCCAGCCTGGTCAACACAGTGAGTTTCAGGAT
AGGCAACATTACAGAGAAACTCTGTCTCATAAAAATATAAATAAATAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA
ATAAATAAAAAGAGAGGATGTAGGGACCGGAGAGAATCAAACAATTAAGG
AATCAAATTTAAAACAAGCGCCACGTTTCGTTTTTTAAATACCTGCTAGC
CTGGTATTTCTATAACTCCCGACTCTTTATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_c09.g1 MSMg01no525_c09.g1 CHROMAT_FILE:
MSMg01no525_c09.g1 PHD_FILE: MSMg01no525_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:39 2005
         (555 letters)



>mm_chr16_56117780_56118734
          Length = 955

 Score =  978 bits (506), Expect = 0.0
 Identities = 506/506 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgagtttttttgttgttgttgtttcaaatgtataatttaagaaaaataataaatacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 actgagtttttttgttgttgttgtttcaaatgtataatttaagaaaaataataaatacac 466

                                                                       
Query: 61  catttagacaaattccgagtataaattcattggaaaaatatgagtgtattgtattctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 catttagacaaattccgagtataaattcattggaaaaatatgagtgtattgtattctgta 406

                                                                       
Query: 121 cttcactaatcactgccactgccaataaatgaaagcaagagtaagtttaccctctgtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cttcactaatcactgccactgccaataaatgaaagcaagagtaagtttaccctctgtgta 346

                                                                       
Query: 181 tgtccaactcagctcctgctgaccaaagcttataaatgtctagaaattttcaaccaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgtccaactcagctcctgctgaccaaagcttataaatgtctagaaattttcaaccaggaa 286

                                                                       
Query: 241 aataaatgtgaaccacatgtggaaataagctcgcctataaagagacgtgtactggcatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aataaatgtgaaccacatgtggaaataagctcgcctataaagagacgtgtactggcatgt 226

                                                                       
Query: 301 cctttagaaagaatcaaacatgctggggcggtgctggtgcatgtctatattcccagcact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cctttagaaagaatcaaacatgctggggcggtgctggtgcatgtctatattcccagcact 166

                                                                       
Query: 361 cgagaggcagaggtagggggatctctgtgacctttaggccagcctggtcaacacagtgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cgagaggcagaggtagggggatctctgtgacctttaggccagcctggtcaacacagtgag 106

                                                                       
Query: 421 tttcaggataggcaacattacagagaaactctgtctcataaaaatataaataaataaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tttcaggataggcaacattacagagaaactctgtctcataaaaatataaataaataaata 46

                                     
Query: 481 aataaataaataaataaataaataaa 506
           ||||||||||||||||||||||||||
Sbjct: 45  aataaataaataaataaataaataaa 20


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)