BAC Information

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BAC

Clone NameMSMg01-525G21
Chromosome16 (Build37)
Map Location 45,177,601 - 45,255,476
singlet/doubletdoublet
Overlap geneAtg3, EG547267, Btla
Upstream geneGm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5
Downstream geneCd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525G21.T7 (MSMg01no525_g21.b1)MSMg01-525G21.TJ (MSMg01no525_g21.g1)
ACCAG595269AG595270
length749753
length of high quality
(start - end)		585 (41 - 625)484 (73 - 556)
definitionCHROMAT_FILE: MSMg01no525_g21.b1 PHD_FILE: MSMg01no525_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:02 2005CHROMAT_FILE: MSMg01no525_g21.g1 PHD_FILE: MSMg01no525_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,255,057 - 45,255,476)(45,177,601 - 45,178,084)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTCAGAAGTACAATGAATAAACTCTAAGATGTCCCGGCAATGAAATGTT
ATTCATCCCTGAGAAGAAATAAACTATTAAGCTATGGAAAAACATGAAGG
AACACATTACCGCATCAAAGAAGCCAGTATGAAAAGGATACATAAGATAT
AACTCCAACTATTCTGGAAAATGCAAAGCAATAGATACAATTCATAGATG
ACACACTCTCAAGGAGTTAAGAGAACAGAAAGGGTAAAGACGTGGAGCAT
GAGACAGTGTCCAGGAGGAGACATAGCAGGGTTGCTCTGTAGGTTGCCCT
AGCAATGTGTACAAGTGAAAATCATAAAAACGACAGCACCAAGAATATAT
ACCCTAAGACAAACTAGAGACATAGGTTGGTAATGACATCTCACCTTTGG
TTCTCATTCGATTAAAATTCTCCTATCCTACAGGTTGTTGGGGGCAGAGG
GGAGGGCATGCAGCTGAGAATATTGCAGAAAAGAGCACATGGAAAATGTT
AGTGTTTTCTTCTTAATATTTCTCGGCTAAAAATTAACTTTTAATTATTT
TAATTCTTTTTATATATTTTAATGAAATTTTTTCATAAAATATATTCTGA
TCATAGTTTCCCCTCCCCAAATGCCCTCTCCAAAATTTTCCCCACCTGCC
CAATTCTACAACCTTTCTTTCTTTATTTCTCTANGAAACAAATAGGAAA

TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATCCCTACAACAAACATTGGTGGGAAG
AGAGAACCAGCTTCTAAAAATTTCCTCTGAACTCCATACATGTGTACACA
CACCAAGTAAATAAGTATTTACAGTATGTACTGTTGCAGTGAGGCTTTGG
TTGGAAATGACTTTTAAAATGGTCACCTAAGGTAATAATAGTGATACAAT
GATACGTGCCCTCTGATACTTCTCAATCACAGCATCTAGCATGGTACTTC
CAGTGAATTATTTATGGGTTAGTCGTTGTCATTGGTGTGTGAATTTCTAG
GGAACATAAACTGCCTGATTAGATGATTCTGATTTTTTTACTGTGGTCAG
TTACCATTGTGCTCAGTGTTGAGTATGAATATTTATGAGGATGGCCACAC
TACTGCTGGAGTTTCTGTAAGATAGCATCTTCTGGTTATGTCAAGGCTAC
CTTAGCTACACTCTGTGGTCTTCTCTTGGTGAAATCACCTAGCAGTGATT
TCTCAGAATGTGTCCTCATCACTAGATGGTGCATGGTCGTAAAACTATTC
ACATAAGAAGCACAGGCAGTCAGAGGAAAGAGATTTCTTCTGTTTTCTTC
CTTCTGAATCAGCAACACCAAGAATAGAACCATGTATGTGACGGGCTGTC
TAATAATGGTTTTGAAGGAATAAATACTGCTGATAATATCTCATGNTAGT
ATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_g21.b1 MSMg01no525_g21.b1 CHROMAT_FILE:
MSMg01no525_g21.b1 PHD_FILE: MSMg01no525_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:02 2005
         (585 letters)



>mm_chr16_45254492_45255476
          Length = 985

 Score =  812 bits (420), Expect = 0.0
 Identities = 420/420 (100%)
 Strand = Plus / Minus

                                                                       
Query: 166 caactattctggaaaatgcaaagcaatagatacaattcatagatgacacactctcaagga 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 caactattctggaaaatgcaaagcaatagatacaattcatagatgacacactctcaagga 926

                                                                       
Query: 226 gttaagagaacagaaagggtaaagacgtggagcatgagacagtgtccaggaggagacata 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 gttaagagaacagaaagggtaaagacgtggagcatgagacagtgtccaggaggagacata 866

                                                                       
Query: 286 gcagggttgctctgtaggttgccctagcaatgtgtacaagtgaaaatcataaaaacgaca 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gcagggttgctctgtaggttgccctagcaatgtgtacaagtgaaaatcataaaaacgaca 806

                                                                       
Query: 346 gcaccaagaatatataccctaagacaaactagagacataggttggtaatgacatctcacc 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gcaccaagaatatataccctaagacaaactagagacataggttggtaatgacatctcacc 746

                                                                       
Query: 406 tttggttctcattcgattaaaattctcctatcctacaggttgttgggggcagaggggagg 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttggttctcattcgattaaaattctcctatcctacaggttgttgggggcagaggggagg 686

                                                                       
Query: 466 gcatgcagctgagaatattgcagaaaagagcacatggaaaatgttagtgttttcttctta 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcatgcagctgagaatattgcagaaaagagcacatggaaaatgttagtgttttcttctta 626

                                                                       
Query: 526 atatttctcggctaaaaattaacttttaattattttaattctttttatatattttaatga 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atatttctcggctaaaaattaacttttaattattttaattctttttatatattttaatga 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no525_g21.g1 MSMg01no525_g21.g1 CHROMAT_FILE:
MSMg01no525_g21.g1 PHD_FILE: MSMg01no525_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:02 2005
         (484 letters)



>mm_chr16_45177401_45178284
          Length = 884

 Score =  920 bits (476), Expect = 0.0
 Identities = 482/484 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatccctacaacaaacattggtgggaagagagaaccagcttctaaaaatttcctctgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatccctacaacaaacattggtgggaagagagaaccagcttctaaaaatttcctctgaac 260

                                                                       
Query: 61  tccatacatgtgtacacacaccaagtaaataagtatttacagtatgtactgttgcagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccatacatgtgtacacacaccaagtaaataagtatttacagtatgtactgttgcagtga 320

                                                                       
Query: 121 ggctttggttggaaatgacttttaaaatggtcacctaaggtaataatagtgatacaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctttggttggaaatgacttttaaaatggtcacctaaggtaataatagtgatacaatga 380

                                                                       
Query: 181 tacgtgccctctgatacttctcaatcacagcatctagcatggtacttccagtgaattatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacgtgccctctgatacttctcaatcacagcatctagcatggtacttccagtgaattatt 440

                                                                       
Query: 241 tatgggttagtcgttgtcattggtgtgtgaatttctagggaacataaactgcctgattag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgggttagtcgttgtcattggtgtgtgaatttctagggaacataaactgcctgattag 500

                                                                       
Query: 301 atgattctgatttttttactgtggtcagttaccattgtgctcagtgttgagtatgaatat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 atgattctgatttttttactgtggtcagttaccattgtgctcagtgttgagtatgagtat 560

                                                                       
Query: 361 ttatgaggatggccacactactgctggagtttctgtaagatagcatcttctggttatgtc 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 ttatgaggatggccacactactgctggagtttctgtaagataacatcttctggttatgtc 620

                                                                       
Query: 421 aaggctaccttagctacactctgtggtcttctcttggtgaaatcacctagcagtgatttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggctaccttagctacactctgtggtcttctcttggtgaaatcacctagcagtgatttc 680

               
Query: 481 tcag 484
           ||||
Sbjct: 681 tcag 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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