BAC Information

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BAC

Clone NameMSMg01-526D12
Chromosome16 (Build37)
Map Location 52,171,342 - 52,324,585
singlet/doubletdoublet
Overlap geneCblb, Alcam
Upstream geneLOC627543
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526D12.T7 (MSMg01no526_d12.b1)MSMg01-526D12.TJ (MSMg01no526_d12.g1)
ACCAG595866AG595867
length739746
length of high quality
(start - end)		667 (41 - 707)666 (70 - 735)
definitionCHROMAT_FILE: MSMg01no526_d12.b1 PHD_FILE: MSMg01no526_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:04 2005CHROMAT_FILE: MSMg01no526_d12.g1 PHD_FILE: MSMg01no526_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,323,923 - 52,324,585)(52,171,342 - 52,172,007)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCATCTTGCCATGTCTTTGACTTGGCTATGTGGCATCAAGAAAGATGAC
AAGTAATCCATGCCACCCTATACAAAAATCTAGCTAGAGGCAGGCACGCC
CTGGTAAACAGAGAGAAATTCATGGATAGGGCTTGATAGCACTATCCACA
TGCACAGACTGCAACCACAGTGTGCAGGCTGTTTACTTTCCACATTTCTT
CCTTTCTCTACTTTTGCTTTTGTATTTGTGCCTTGTCTGATTTTTCCTGG
GAGAGAATATTAAGTCAGTCTGAGATCATAGTATAGATACGTGTGATTTA
TGAACAAGACCTGGATTCTGGGGCTGGATGATGAAGTTTGAAAAGAGTTA
AAACTTTGGAGAATAAGAAAAAGTTTCAAAGCTGGAGGCAACTCCGGGGG
CAAATTTTACCCATCTTACAGCATTTCTGTCTTCTGACACCTTTACAAAT
GATAAAATTACCTTTCAATAGAACTTCGTATATTTCCTATTCTACTCTTC
ACCTTCCTAAATTATCTTGTTCTTTCCCACTTTTCCTCCCACTCATCAAT
TAAGAATAATGAGTGTCAGAGAAAATGGAATATATGAAAAGTGATTGCTC
AAATATTAATAGATGTCAGCATTATATCTCTTAAGTTCACGCATGCTACT
ATTATCTGATTGAGCTTTGTAGGAAAGCTACAATGGACN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAATCACATGTTAGATTTTGTCCTCCAACA
ACTCCTTTTCAGAAACAATCATATTAGATTCACAGAAATGAGTCTCAGCA
CTTGTAAGCCTTTGACTGTTTGCATGCTTGCATAATTTCGGTCTCCTAAT
TAGGAAGAACTACACAGAATTTCATGTGTGGTATTAAGAATATGCTCAAC
TCTCAAGACACAGTTTAGAACTGATTACAGCATGATCAAATACTAAGCAA
ATGATGTGTACTTTTAAAATAATATAAAGACAAGGTGTCTTCCATTTATA
GCAATGAAATTTCCCTGGTCAGTGCCTCCACTACTGAGGTCACCTGCCCT
GTTGTCTCTCAACATTCATGTAAGCCCTATTGCACATGACCCATGTAAGG
GAATTTGCTATAAAAACAAGTGAGAAATAAAAGACTGTAGTCTGAAATAG
ATACAATATTGCATTAATTCTCCACAAAATAGAACTACACTTGCAGCTAT
CAAATAAATTGTTCATTAAAAACAAAACAAAAAATGAAAAAAATTCTTAA
CTTTTCAGAGACAGGAGAAATCTTTAAGCTACAGTCCATCGATACAATTC
ATGAAGCCATTAGTTAAAATGCTACTCACATTTTGAAACATACTAATCTG
ATGAAGTTAGAAAGGAGTTGCTTAATCCCCTCAAGTTAATGCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_d12.b1 MSMg01no526_d12.b1 CHROMAT_FILE:
MSMg01no526_d12.b1 PHD_FILE: MSMg01no526_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:04 2005
         (667 letters)



>mm_chr16_52323719_52324785
          Length = 1067

 Score = 1266 bits (655), Expect = 0.0
 Identities = 661/663 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcatcttgccatgtctttgacttggctatgtggcatcaagaaagatgacaagt 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 867 gaattcttcatcttgccatgtctttgacttggctatgtggcattaagaaagatgacaagt 808

                                                                       
Query: 65  aatccatgccaccctatacaaaaatctagctagaggcaggcacgccctggtaaacagaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aatccatgccaccctatacaaaaatctagctagaggcaggcacgccctggtaaacagaga 748

                                                                       
Query: 125 gaaattcatggatagggcttgatagcactatccacatgcacagactgcaaccacagtgtg 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 747 gaaattcatggatagggcttgatagcactgtccacatgcacagactgcaaccacagtgtg 688

                                                                       
Query: 185 caggctgtttactttccacatttcttcctttctctacttttgcttttgtatttgtgcctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 caggctgtttactttccacatttcttcctttctctacttttgcttttgtatttgtgcctt 628

                                                                       
Query: 245 gtctgatttttcctgggagagaatattaagtcagtctgagatcatagtatagatacgtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gtctgatttttcctgggagagaatattaagtcagtctgagatcatagtatagatacgtgt 568

                                                                       
Query: 305 gatttatgaacaagacctggattctggggctggatgatgaagtttgaaaagagttaaaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gatttatgaacaagacctggattctggggctggatgatgaagtttgaaaagagttaaaac 508

                                                                       
Query: 365 tttggagaataagaaaaagtttcaaagctggaggcaactccgggggcaaattttacccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttggagaataagaaaaagtttcaaagctggaggcaactccgggggcaaattttacccat 448

                                                                       
Query: 425 cttacagcatttctgtcttctgacacctttacaaatgataaaattacctttcaatagaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttacagcatttctgtcttctgacacctttacaaatgataaaattacctttcaatagaac 388

                                                                       
Query: 485 ttcgtatatttcctattctactcttcaccttcctaaattatcttgttctttcccactttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttcgtatatttcctattctactcttcaccttcctaaattatcttgttctttcccactttt 328

                                                                       
Query: 545 cctcccactcatcaattaagaataatgagtgtcagagaaaatggaatatatgaaaagtga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cctcccactcatcaattaagaataatgagtgtcagagaaaatggaatatatgaaaagtga 268

                                                                       
Query: 605 ttgctcaaatattaatagatgtcagcattatatctcttaagttcacgcatgctactatta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttgctcaaatattaatagatgtcagcattatatctcttaagttcacgcatgctactatta 208

              
Query: 665 tct 667
           |||
Sbjct: 207 tct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_d12.g1 MSMg01no526_d12.g1 CHROMAT_FILE:
MSMg01no526_d12.g1 PHD_FILE: MSMg01no526_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:04 2005
         (666 letters)



>mm_chr16_52171142_52172207
          Length = 1066

 Score = 1272 bits (658), Expect = 0.0
 Identities = 664/666 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatcacatgttagattttgtcctccaacaactccttttcagaaacaatcatattagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatcacatgttagattttgtcctccaacaactccttttcagaaacaatcatattagat 260

                                                                       
Query: 61  tcacagaaatgagtctcagcacttgtaagcctttgactgtttgcatgcttgcataatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacagaaatgagtctcagcacttgtaagcctttgactgtttgcatgcttgcataatttc 320

                                                                       
Query: 121 ggtctcctaattaggaagaactacacagaatttcatgtgtggtattaagaatatgctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtctcctaattaggaagaactacacagaatttcatgtgtggtattaagaatatgctcaa 380

                                                                       
Query: 181 ctctcaagacacagtttagaactgattacagcatgatcaaatactaagcaaatgatgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcaagacacagtttagaactgattacagcatgatcaaatactaagcaaatgatgtgt 440

                                                                       
Query: 241 acttttaaaataatataaagacaaggtgtcttccatttatagcaatgaaatttccctggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttttaaaataatataaagacaaggtgtcttccatttatagcaatgaaatttccctggt 500

                                                                       
Query: 301 cagtgcctccactactgaggtcacctgccctgttgtctctcaacattcatgtaagcccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtgcctccactactgaggtcacctgccctgttgtctctcaacattcatgtaagcccta 560

                                                                       
Query: 361 ttgcacatgacccatgtaagggaatttgctataaaaacaagtgagaaataaaagactgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgcacatgacccatgtaagggaatttgctataaaaacaagtgagaaataaaagactgta 620

                                                                       
Query: 421 gtctgaaatagatacaatattgcattaattctccacaaaatagaactacacttgcagcta 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctgaaatacatacaatattgcattaattctccacaaaatagaactacacttgcagcta 680

                                                                       
Query: 481 tcaaataaattgttcattaaaaacaaaacaaaaaatgaaaaaaattcttaacttttcaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaaataaattgttcattaaaaacaaaacaaaaaatgaaaaaaattcttaacttttcaga 740

                                                                       
Query: 541 gacaggagaaatctttaagctacagtccatcgatacaattcatgaagccattagttaaaa 600
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 gacaggagaaatctttaagctacagtccatcaatacaattcatgaagccattagttaaaa 800

                                                                       
Query: 601 tgctactcacattttgaaacatactaatctgatgaagttagaaaggagttgcttaatccc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgctactcacattttgaaacatactaatctgatgaagttagaaaggagttgcttaatccc 860

                 
Query: 661 ctcaag 666
           ||||||
Sbjct: 861 ctcaag 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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