BAC Information

Click to search

BAC

Clone NameMSMg01-526J21
Chromosome16 (Build37)
Map Location 64,825,150 - 64,825,728
singlet/doubletsinglet
Overlap geneLOC433036
Upstream geneEpha3, LOC100043540, Ckt2, 4930453N24Rik, Zfp654
Downstream geneCggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931, Pou1f1, Chmp2b, EG383186, Vgll3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526J21.T7 (MSMg01no526_j21.b1)MSMg01-526J21.TJ (MSMg01no526_j21.g1)
ACCAG596166AG596167
length752747
length of high quality
(start - end)
605 (37 - 641)579 (66 - 644)
definitionCHROMAT_FILE: MSMg01no526_j21.b1 PHD_FILE: MSMg01no526_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:35 2005CHROMAT_FILE: MSMg01no526_j21.g1 PHD_FILE: MSMg01no526_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTTAGTTCTGTACCCCGTTTTTTTTTCCATTTTTTATTAGGTATTTAACT
CATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCC
CACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTA
CTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATG
GCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCG
GGGTACTGGTTAGCTCATGATGTTGTTCCACCTATAGGGTTGCAGATCCC
TTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGAT
CCATCCATTAGCTGTCTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCG
GCATAGTCTCACAAGAGACAGCTACATCTGCGTCCTTTCAATAAAATCTT
GCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGAT
CCCTGGATATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAGCTCCAA
ACTCCGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAAATCTAANG
AGGGGCATAGTGGCCACACTTCAGNCTTCATTCTTCTTGAGGTTCATGTG
TTTTAGCAATTATATCTTATATCTTGGGAATCCTAGGTTTGGGGCTATAT
CN
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATTGCAATCATTTTGAGTAAGACTTATTATCCAAA
TCTCCATTGGTTACCTGACCTGCAATTCTTAAAATCTTATTCAGCTATCC
TACGGATGTGATTCTGAAGGTTTTTGTTTTTAATTTCTTCATATAATTGT
ATAAATGTATCTATGTCTTTAAATGATTGATTTTGCATGTTTGAAATTAA
CCTTATACTTTTCAATATCACCAGATCTCACTATGTAAACCCTTCTTCTA
GCTCCCAAATCCATAAGCTGGCCAGAACTTCTGGCCACTAAGAAATGCTG
AGAATGGGAAGGAAATAGTCTTACCCAGGGAAGAGCACATCAACTGCTTA
TCCAATACTAAATGGTCATCACTGAAAACATACAGAAAAGTACCTTATAA
AGATGTATTTAGTAATACATAGGTATATACATAGTGGTAGTTTCACTATT
CTAGGCCCATGGAAGTGCTACTATTAGGCGGTGTGACCTGTTGGAGGAAG
TGTTCACCGTGTAGGCGAACTTTGAGGGTTCCTAGTACTCAAACTTTTCC
CAGAGCGAATGAATCACTCTTCTGGCTACCTTTGGTGATCAAGATGTAGA
ACTCTCAGTTCTTCCAGTATCATGTCTGCCTAGATGCTGCCATGCTTCCC
TCCATGATTGATGACNATGAACTNGACCTCTGAAATTGTTAGCCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_j21.g1 MSMg01no526_j21.g1 CHROMAT_FILE:
MSMg01no526_j21.g1 PHD_FILE: MSMg01no526_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:36 2005
         (579 letters)



>mm_chr16_64824950_64825928
          Length = 979

 Score = 1096 bits (567), Expect = 0.0
 Identities = 576/579 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgcaatcattttgagtaagacttattatccaaatctccattggttacctgacctgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgcaatcattttgagtaagacttattatccaaatctccattggttacctgacctgcaa 260

                                                                       
Query: 61  ttcttaaaatcttattcagctatcctacggatgtgattctgaaggtttttgtttttaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttaaaatcttattcagctatcctacggatgtgattctgaaggtttttgtttttaatt 320

                                                                       
Query: 121 tcttcatataattgtataaatgtatctatgtctttaaatgattgattttgcatgtttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcatataattgtataaatgtatctatgtctttaaatgattgattttgcatgtttgaa 380

                                                                       
Query: 181 attaaccttatacttttcaatatcaccagatctcactatgtaaacccttcttctagctcc 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaaccttatactttccaatatcaccagatctcactatgtaaacccttcttctagctcc 440

                                                                       
Query: 241 caaatccataagctggccagaacttctggccactaagaaatgctgagaatgggaaggaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaatccataagctggccagaacttctggccactaagaaatgctgagaatgggaaggaaa 500

                                                                       
Query: 301 tagtcttacccagggaagagcacatcaactgcttatccaatactaaatggtcatcactga 360
           |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 501 tagtcttacccagggaagagcacatcaattgcttatccaatactaaatagtcatcactga 560

                                                                       
Query: 361 aaacatacagaaaagtaccttataaagatgtatttagtaatacataggtatatacatagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacatacagaaaagtaccttataaagatgtatttagtaatacataggtatatacatagt 620

                                                                       
Query: 421 ggtagtttcactattctaggcccatggaagtgctactattaggcggtgtgacctgttgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtagtttcactattctaggcccatggaagtgctactattaggcggtgtgacctgttgga 680

                                                                       
Query: 481 ggaagtgttcaccgtgtaggcgaactttgagggttcctagtactcaaacttttcccagag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaagtgttcaccgtgtaggcgaactttgagggttcctagtactcaaacttttcccagag 740

                                                  
Query: 541 cgaatgaatcactcttctggctacctttggtgatcaaga 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cgaatgaatcactcttctggctacctttggtgatcaaga 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)