BAC Information

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BAC

Clone NameMSMg01-527K21
Chromosome16 (Build37)
Map Location 45,448,327 - 45,610,773
singlet/doubletdoublet
Overlap geneGm609, LOC628681, Slc9a10, Gcet2
Upstream geneWdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905
Downstream geneBC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527K21.T7 (MSMg01no527_k21.b1)MSMg01-527K21.TJ (MSMg01no527_k21.g1)
ACCAG596975AG596976
length781788
length of high quality
(start - end)		614 (47 - 660)580 (76 - 655)
definitionCHROMAT_FILE: MSMg01no527_k21.b1 PHD_FILE: MSMg01no527_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:00 2005CHROMAT_FILE: MSMg01no527_k21.g1 PHD_FILE: MSMg01no527_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,448,327 - 45,448,937)(45,610,194 - 45,610,773)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTCAAAATCATATTTAATGAACTATGTTTCCTCTAAAATTATG
GATAAATCCTATCAATATATTAAAGAACCAGTAGCAAATGAATACATGTT
AAGTGGTCATGTACTTTTTTTTTCAACTTTCTTTAATCAACAAATAAAAT
ATACCCATAGTGTAAGGAGCTAGAATATGAAGATTGTGGGGGTTCGAAAT
AAGAATGGCTACCGTAGGCTCATGTATTTGAATGTTGGTCCTCAAGGAGT
GAGATGACAGGAGAGAAATTAGAAGGTGTGGCTTTGTTAAGAGTAGGTGT
GGCCTACAAAAGCATCATAAACCTCTCAAAGGCATGAGGCAAGTTTCTTG
CGTTCATCAGCCAGTTCTGTGCTTATGCTTTCCCTGGGCTGATTTGTGAG
ACTGTGGTCTTCTAACAATCTTTTACTTTTCTGCACTTCAGCATTTTTAT
TTCTATAACACAATTAATGTTACCTGACTCACAGCGATGAATACAATGAG
AACACGCAGTCATCTGACATAAGTCACCACAAACATTTTAGTTTCCATAG
GTAGTTTGGTCCTTGCCTCCAGGAAAGGATTAAACAAAAAACATGAAACC
CAAACTAGCATCAAAATAATAAACAAACCAACAAACAAACAAATAAATAG
ATTTTTTAAAGTAACCACACTGTCCATCCCTTATCCTATAACAGTTTCTC
TACTGGTCTCCTCTTCTTCTTCTTCATCAAC

NCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGTCACACCCCTTCCCTAGTCCAT
TCACCCTAAAAGCTGTCCTCTTTTTTTCTTTCACCTCTGGCTCAGGTCTC
TGCTCGCAGGAGGGAGTGAGCTCACCTGGTTGTCCTCTGCAAACAGTTCC
CCATGAGGCAGGCCCCTCAGCACCTTCCCTCTGGTAGTCTCCACTTCCTT
CTCAGCCGGCTTGCACCTTGGTCTGGCACTGTGCTCTGTAACTGGCAGTT
TCCGACTGACAGTAGCTTCAGAGCTGCTCTGGTCACCCGTGTAGAGTCAG
AAAGAGGAGGTGCCTGCTGGATGGTGGAGGAAGAGGCTGAGGGGGAGATG
AGAGGCACATTTGTGTGTCTTGAAAGACCAGGGCCTTGATGCACCAGACT
ATTAACCAAAGGAAAAAAAGGTTGGTTAGGGAGAGGGTTAGCCACTAGGG
AGTCCCAGGCTTTTCCTAACGGAGGAACCATGGGAGATTTTCCATGGCAG
ACACCTGTATTTAGTAAGAAAGTCAAATGGGAGAGGATCATTGTTTAGAA
GCAAACAAAACAAAAAAGTCTGAAATATCAAATACCCCCCCTCAAAAAAA
AAAAAAAACTCCAAAAGGGAAAACAGAAATCAGCCACAGTCTAGCTGGGC
ATATATAAACTTTCAAAATGTACTCACGAGCACATATACTGGAGTAACTG
TACAAACAGGGCAGTTGAGAGGGACCATTGCTGAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_k21.b1 MSMg01no527_k21.b1 CHROMAT_FILE:
MSMg01no527_k21.b1 PHD_FILE: MSMg01no527_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:00 2005
         (614 letters)



>mm_chr16_45448124_45449137
          Length = 1014

 Score = 1174 bits (607), Expect = 0.0
 Identities = 610/611 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactcaaaatcatatttaatgaactatgtttcctctaaaattatggataaatcc 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactcaaaattatatttaatgaactatgtttcctctaaaattatggataaatcc 263

                                                                       
Query: 64  tatcaatatattaaagaaccagtagcaaatgaatacatgttaagtggtcatgtacttttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatcaatatattaaagaaccagtagcaaatgaatacatgttaagtggtcatgtacttttt 323

                                                                       
Query: 124 ttttcaactttctttaatcaacaaataaaatatacccatagtgtaaggagctagaatatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttcaactttctttaatcaacaaataaaatatacccatagtgtaaggagctagaatatg 383

                                                                       
Query: 184 aagattgtgggggttcgaaataagaatggctaccgtaggctcatgtatttgaatgttggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagattgtgggggttcgaaataagaatggctaccgtaggctcatgtatttgaatgttggt 443

                                                                       
Query: 244 cctcaaggagtgagatgacaggagagaaattagaaggtgtggctttgttaagagtaggtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctcaaggagtgagatgacaggagagaaattagaaggtgtggctttgttaagagtaggtg 503

                                                                       
Query: 304 tggcctacaaaagcatcataaacctctcaaaggcatgaggcaagtttcttgcgttcatca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggcctacaaaagcatcataaacctctcaaaggcatgaggcaagtttcttgcgttcatca 563

                                                                       
Query: 364 gccagttctgtgcttatgctttccctgggctgatttgtgagactgtggtcttctaacaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gccagttctgtgcttatgctttccctgggctgatttgtgagactgtggtcttctaacaat 623

                                                                       
Query: 424 cttttacttttctgcacttcagcatttttatttctataacacaattaatgttacctgact 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttttacttttctgcacttcagcatttttatttctataacacaattaatgttacctgact 683

                                                                       
Query: 484 cacagcgatgaatacaatgagaacacgcagtcatctgacataagtcaccacaaacatttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cacagcgatgaatacaatgagaacacgcagtcatctgacataagtcaccacaaacatttt 743

                                                                       
Query: 544 agtttccataggtagtttggtccttgcctccaggaaaggattaaacaaaaaacatgaaac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agtttccataggtagtttggtccttgcctccaggaaaggattaaacaaaaaacatgaaac 803

                      
Query: 604 ccaaactagca 614
           |||||||||||
Sbjct: 804 ccaaactagca 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no527_k21.g1 MSMg01no527_k21.g1 CHROMAT_FILE:
MSMg01no527_k21.g1 PHD_FILE: MSMg01no527_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:01 2005
         (580 letters)



>mm_chr16_45609994_45610973
          Length = 980

 Score = 1122 bits (580), Expect = 0.0
 Identities = 580/580 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtcacaccccttccctagtccattcaccctaaaagctgtcctctttttttctttcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ttgtcacaccccttccctagtccattcaccctaaaagctgtcctctttttttctttcacc 721

                                                                       
Query: 61  tctggctcaggtctctgctcgcaggagggagtgagctcacctggttgtcctctgcaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tctggctcaggtctctgctcgcaggagggagtgagctcacctggttgtcctctgcaaaca 661

                                                                       
Query: 121 gttccccatgaggcaggcccctcagcaccttccctctggtagtctccacttccttctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gttccccatgaggcaggcccctcagcaccttccctctggtagtctccacttccttctcag 601

                                                                       
Query: 181 ccggcttgcaccttggtctggcactgtgctctgtaactggcagtttccgactgacagtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ccggcttgcaccttggtctggcactgtgctctgtaactggcagtttccgactgacagtag 541

                                                                       
Query: 241 cttcagagctgctctggtcacccgtgtagagtcagaaagaggaggtgcctgctggatggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cttcagagctgctctggtcacccgtgtagagtcagaaagaggaggtgcctgctggatggt 481

                                                                       
Query: 301 ggaggaagaggctgagggggagatgagaggcacatttgtgtgtcttgaaagaccagggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggaggaagaggctgagggggagatgagaggcacatttgtgtgtcttgaaagaccagggcc 421

                                                                       
Query: 361 ttgatgcaccagactattaaccaaaggaaaaaaaggttggttagggagagggttagccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttgatgcaccagactattaaccaaaggaaaaaaaggttggttagggagagggttagccac 361

                                                                       
Query: 421 tagggagtcccaggcttttcctaacggaggaaccatgggagattttccatggcagacacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tagggagtcccaggcttttcctaacggaggaaccatgggagattttccatggcagacacc 301

                                                                       
Query: 481 tgtatttagtaagaaagtcaaatgggagaggatcattgtttagaagcaaacaaaacaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgtatttagtaagaaagtcaaatgggagaggatcattgtttagaagcaaacaaaacaaaa 241

                                                   
Query: 541 aagtctgaaatatcaaataccccccctcaaaaaaaaaaaa 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aagtctgaaatatcaaataccccccctcaaaaaaaaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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