BAC Information

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BAC

Clone NameMSMg01-528N06
Chromosome16 (Build37)
Map Location 38,687,949 - 38,864,504
singlet/doubletdoublet
Overlap geneCdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik
Upstream geneLOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a
Downstream geneIgsf11
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528N06.T7 (MSMg01no528_n06.b1)MSMg01-528N06.TJ (MSMg01no528_n06.g1)
ACCAG597852AG597853
length750749
length of high quality
(start - end)		662 (50 - 711)657 (79 - 735)
definitionCHROMAT_FILE: MSMg01no528_n06.b1 PHD_FILE: MSMg01no528_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:32 2005CHROMAT_FILE: MSMg01no528_n06.g1 PHD_FILE: MSMg01no528_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,687,949 - 38,688,606)(38,864,107 - 38,864,504)
sequence
NAACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCACGCTTTCTTGGAAACGTGATTACTTCTCTTCAGAGCTGA
GTCTACTCTAACCAGAACAAGGGGTGTGAAAATAGAAGGGCTTGGCTTCC
TAGCGAAATGGCTGGTGGGGTATTGGGTTGCTGTGAGCTGTATTACGTTT
ATCCAGTCTTAAAATAACATTGCTGCATGGAGAAAATGACTCCCCCAAAC
ATCCCCTCCGCACTGCAACTGAAGAAACTGTGCGAGTTTCATATTCCTTT
AGCAACTCAAGATTTTTGGAGATGTGGTATTTATTTTTTGTGCCTTTGTC
TTGCCAGATCCTGTGGCCGACCACGGCAAGCTATCGTTATCTCCTTTTAT
AGAGGAGGACGCTGAGGTACAGGGAGGGGACCCTTCCAAATCATGGGACT
AGTCTACAGGTGTTCTGGTTCCTACAAGGGCTTTAAATGCACACACGACA
TAGATAGACTTTACAGCCTCCTGGGAGAGGGAATCTAGGGCACGGCTTTG
GTATTGACAGCTCTGTGTCCTTGGGGAACAGATGTCCTCTTTGTATACCG
AGTCTAATAACTACCTACCTCACCTACTTTGTTGAAGTTTGAAGAACAAA
TGAAATTCAGAGCAAGTACTTTAGCATATGCAAAAGGTCTCTTCTTCTGT
TTTTCCTACTCCAACATGTCAGTCTGGTCTCCAGCCGTCTACTAACTTGG


TTTTCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACGATCCCAAGACATACAGA
CACGTCAAGACCAATTTGAGTAGCACAAGCTCTGTCACGCTGCTCTCCTG
GATGACTGTGCTTTGAGGAACTGCAGCAGGTGCTAAGTACAAGCATGGCT
CTTTCCATCTTATAAGAAGTAAAACCACACAATAAAAGAGAATCTGGGTA
GGTACTTTTGGTAGTTGGTGGTCCTATCTTTCTACATCAATTAATCAAGA
TAATCCCCCACAGACTGATCTCCCAGGTAATTCTAGAGCCAGTCAAGTCG
ATAATTAGCACTAACCATTCACAGCATGAAAAAGCCCTACCCTATGCAGT
CATAAGTCAGAAGATTTTATTTTTTTTTAAAAAGTTGTATTAAGATACTC
TTCAACCATCATGATACATTCAATTAAAATGTATGACAAACGGGCTTGAC
CATATTTGTAGAGTTGTACGACTGTCACCACAATGAATCAGAACATTTTC
CTCGCCCCCAAATTAACCTCACATTCATCGGCAGTCACTTGCCTTTCTCG
AACTACCTCTTATCCCCAGATAACCACTAACCTATTTTATTTATAGAGTT
GGCTTCATAGGACACTTCACACTAAAAGAACACACTCTGTGCCAGACTAA
GCTAAAACAACAGTCCTATCTCACATTCCACTAGTCATGTGTAAGAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_n06.b1 MSMg01no528_n06.b1 CHROMAT_FILE:
MSMg01no528_n06.b1 PHD_FILE: MSMg01no528_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:32 2005
         (662 letters)



>mm_chr16_38687745_38688806
          Length = 1062

 Score = 1257 bits (650), Expect = 0.0
 Identities = 656/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacgctttcttggaaacgtgattacttctcttcagagctgagtctactctaacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacgctttcttggaaacgtgattacttctcttcagagctgagtctactctaacc 264

                                                                       
Query: 65  agaacaaggggtgtgaaaatagaagggcttggcttcctagcgaaatggctggtggggtat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaacaaggggtgtgaaaatagaagggcttggcttcctagcgaaatggctggtggggtat 324

                                                                       
Query: 125 tgggttgctgtgagctgtattacgtttatccagtcttaaaataacattgctgcatggaga 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggattgctgtgagctgtattacgtttatccagtcttaaaataacattgctgcatggaga 384

                                                                       
Query: 185 aaatgactcccccaaacatcccctccgcactgcaactgaagaaactgtgcgagtttcata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatgactcccccaaacatcccctccgcactgcaactgaagaaactgtgcgagtttcata 444

                                                                       
Query: 245 ttcctttagcaactcaagatttttggagatgtggtatttattttttgtgcctttgtcttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcctttagcaactcaagatttttggagatgtggtatttattttttgtgcctttgtcttg 504

                                                                       
Query: 305 ccagatcctgtggccgaccacggcaagctatcgttatctccttttatagaggaggacgct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagatcctgtggccgaccacggcaagctatcgttatctccttttatagaggaggacgct 564

                                                                       
Query: 365 gaggtacagggaggggacccttccaaatcatgggactagtctacaggtgttctggttcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaggtacagggaggggacccttccaaatcatgggactagtctacaggtgttctggttcct 624

                                                                       
Query: 425 acaagggctttaaatgcacacacgacatagatagactttacagcctcctgggagagggaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaagggctttaaatgcacacacgacatagatagactttacagcctcctgggagagggaa 684

                                                                       
Query: 485 tctagggcacggctttggtattgacagctctgtgtccttggggaacagatgtcctctttg 544
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctaggacacggctttggtattgacagctctgtgtccttggggaacagatgtcctctttg 744

                                                                       
Query: 545 tataccgagtctaataactacctacctcacctactttgttgaagtttgaagaacaaatga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tataccgagtctaataactacctacctcacctactttgttgaagtttgaagaacaaatga 804

                                                                     
Query: 605 aattcagagcaagtactttagcatatgcaaaaggtctcttcttctgtttttcctactc 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aattcagagcaagtactttagcatatgcaaaaggtctcttcttctgtttttcctactc 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no528_n06.g1 MSMg01no528_n06.g1 CHROMAT_FILE:
MSMg01no528_n06.g1 PHD_FILE: MSMg01no528_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:32 2005
         (657 letters)



>mm_chr16_38864107_38865163
          Length = 1057

 Score =  770 bits (398), Expect = 0.0
 Identities = 398/398 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacgatcccaagacatacagacacgtcaagaccaatttgagtagcacaagctctgtcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttacgatcccaagacatacagacacgtcaagaccaatttgagtagcacaagctctgtcac 339

                                                                       
Query: 61  gctgctctcctggatgactgtgctttgaggaactgcagcaggtgctaagtacaagcatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gctgctctcctggatgactgtgctttgaggaactgcagcaggtgctaagtacaagcatgg 279

                                                                       
Query: 121 ctctttccatcttataagaagtaaaaccacacaataaaagagaatctgggtaggtacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctctttccatcttataagaagtaaaaccacacaataaaagagaatctgggtaggtacttt 219

                                                                       
Query: 181 tggtagttggtggtcctatctttctacatcaattaatcaagataatcccccacagactga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tggtagttggtggtcctatctttctacatcaattaatcaagataatcccccacagactga 159

                                                                       
Query: 241 tctcccaggtaattctagagccagtcaagtcgataattagcactaaccattcacagcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tctcccaggtaattctagagccagtcaagtcgataattagcactaaccattcacagcatg 99

                                                                       
Query: 301 aaaaagccctaccctatgcagtcataagtcagaagattttatttttttttaaaaagttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  aaaaagccctaccctatgcagtcataagtcagaagattttatttttttttaaaaagttgt 39

                                                 
Query: 361 attaagatactcttcaaccatcatgatacattcaatta 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  attaagatactcttcaaccatcatgatacattcaatta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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