Query= MSMg01no529_k15.b1 MSMg01no529_k15.b1 CHROMAT_FILE:
MSMg01no529_k15.b1 PHD_FILE: MSMg01no529_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:43 2005
(712 letters)
>mm_chr16_44811059_44812173
Length = 1115
Score = 567 bits (293), Expect = e-165
Identities = 388/421 (92%), Gaps = 11/421 (2%)
Strand = Plus / Minus
Query: 4 ggaattcttgtttgta-gctctagatccattccccagcttttccaatccttctctgtgac 62
|||||||| ||||||| | |||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 419 ggaattctcgtttgtatg-tctagatccattccccagctttcccagtccttctctgtgac 361
Query: 63 tctgaa-gggattcattaggagcactggcagaaaactggcagtaaatgtaagtaggtcaa 121
|||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 360 tctgaaggggagtcattaggagcactggcagaaaactcacagtaaatgtaggtaggtcaa 301
Query: 122 caggtaggaagaaagtcaggtcataatattgctcctgttgagatgtcacattgaatgtct 181
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 300 caggtaggaagaaagtcaggtcacaacattgctcctgttgagatgtcacattgaatgtca 241
Query: 182 ctactatgac--attcagctgggcaccagagcagggatgtggaggtcagagaaa-gaaga 238
||||| |||| ||||||||||||||| |||||||||| ||||| ||||||||| |||||
Sbjct: 240 ctactgtgaccaattcagctgggcaccggagcagggatatggagatcagagaaaagaaga 181
Query: 239 tcccccgggttcctggtcactcagtcccttgaaatatcaaactcttgttttgatgaaaga 298
|| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 180 tctcccgggttcctggtcagtcattcccttgaaatatcaaactcttgttttgatgaaaga 121
Query: 299 ccctacccccc--ctaaaaaaaaa-tagggaagagcaatttaggaaactacttgttg-ag 354
|||| |||||| ||||||||||| |||||||||| ||||||||||||||||| ||| |
Sbjct: 120 cccttccccccacctaaaaaaaaaatagggaagagtaatttaggaaactactt-ttggac 62
Query: 355 agtctgtggcctccatgtgagaactgcacacacatacatacacatcatacatatacacat 414
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 61 agtctgtggcctccatgtgagaactgcatacacatacatacacctcatacatatacacat 2
Query: 415 a 415
|
Sbjct: 1 a 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1115
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1105
Effective search space: 775710
Effective search space used: 775710
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no529_k15.g1 MSMg01no529_k15.g1 CHROMAT_FILE:
MSMg01no529_k15.g1 PHD_FILE: MSMg01no529_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:43 2005
(625 letters)
>mm_chr16_44705945_44706969
Length = 1025
Score = 1065 bits (551), Expect = 0.0
Identities = 596/611 (97%)
Strand = Plus / Plus
Query: 1 attctctgttggaaagttatatgtgaatacaactaacacaagtaaagtcatggacagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctctgttggaaagttatatgtgaatacaactaacacaagtaaagtcatggacagtgc 260
Query: 61 ctgtggcagcttgaggggagcagagttgagttggtgtgaatgcaaaggaagacgtatagg 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ctgtggcagcttgaggggggcagagttgagttggtgtgaatgcaaaggaagatgtatagg 320
Query: 121 gcagcatttaatcaggatgtaaggtgtaagcatgagtgtgtcagtgcaaagggggaatgc 180
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 321 gcagcatttgatcaggatgtaaggtgtaagcatgagcgtgtcagtgcaaagggggaaagc 380
Query: 181 actgtgttttgggtaagggaacaggaggaagtgcaaatatgtgtgtcagaaggggagggc 240
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 actgtgttttgggtaaggaaacaggaggaagtgcaaatatgtgtgttagaaggggagggc 440
Query: 241 acctgcaagtgtgttcatagcaggagcccttgaatagagctggaagcaattatcaatgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctgcaagtgtgttcatagcaggagcccttgaatagagctggaagcaattatcaatgga 500
Query: 301 gggaggtttgcaccactgtggctcttcatggggagtcaactttgtccctcaggggacttt 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggaggtttgcaccactgtggttcttcatggggagtcaactttgtccctcaggggacttt 560
Query: 361 tttgacagcgtctccacatgtttttaaatgggcacagctagggtaaaagctagaaagaca 420
|||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 561 tttgacagtgtctccacatgtttttaagtgggcacagctagggtaaaagccagaaagaca 620
Query: 421 ttgtatgtccttcaatgaacaggatatcaaaacagacttccatcaaaatgtgaatggtac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtatgtccttcaatgaacaggatatcaaaacagacttccatcaaaatgtgaatggtac 680
Query: 481 cagggtttagaaactctaaaaagaaagtgagaaatcagtaagaaaaagaaagaaaagaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagggtttagaaactctaaaaagaaagtgagaaatcagtaagaaaaagaaagaaaagaga 740
Query: 541 cagataggcagatagatagatagatagatagatagatagatagatagatagatagataga 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct: 741 cagataggcagatagatagatagatagatagatagatagatagatagatggatggatgga 800
Query: 601 tagatggatgg 611
| |||||||||
Sbjct: 801 tggatggatgg 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
