Query= MSMg01no529_l04.b1 MSMg01no529_l04.b1 CHROMAT_FILE:
MSMg01no529_l04.b1 PHD_FILE: MSMg01no529_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:46 2005
(698 letters)
>mm_chr16_18316593_18317685
Length = 1093
Score = 1292 bits (668), Expect = 0.0
Identities = 686/694 (98%), Gaps = 5/694 (0%)
Strand = Plus / Plus
Query: 5 gaattcatctctgttggctgccaagatgagcctgggaaaagaaagttcaagggaagccat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctctgttggctgccaagatgagcctgggaaaagaaagttcaagggaagccat 264
Query: 65 gtgctaggggctggcctgcatgtgctccacctcggagctgcagcctctcttgtttaacat 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgctaggg-ctggcctgcatgtgctccacctcggagctgcagcctctcttgtttaacat 323
Query: 125 taaatctacagcagcagccagcaacgtgagtaaggaccccaccctcggctccacctgagt 184
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaatctacagcagcagc----aacgtgagtaaggaccccaccctcggctccacctgagt 379
Query: 185 ccttgctacccatccacagggcccctgctcaggagacaggcaggtgctgggaagagagga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccttgctacccatccacagggcccctgctcaggagacaggcaggtgctgggaagagagga 439
Query: 245 aagtatgaggtaggatagaaagaaaatttgggagacagaggaagggaaagggttgaactg 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 440 aagtatgaggtaggatagaaagaaaatttggaagacagaggaagggaaagggttgaactg 499
Query: 305 tctcacaaactcagaattcagaattctagtaaaaaatgaatatttgctgttaagattgat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctcacaaactcagaattcagaattctagtaaaaaatgaatatttgctgttaagattgat 559
Query: 365 tacattgggcaggtacatgcgatgattccgcagttaatgagcataaactgcccttccaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tacattgggcaggtacatgcgatgattccgcagttaatgagcataaactgcccttccaga 619
Query: 425 ggactggagttcaactcccagaatacacatcaggaagctcacaattaccttgaaccccag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggactggagttcaactcccagaatacacatcaggaagctcacaattaccttgaaccccag 679
Query: 485 ctctaggaaattccacacacctggtatctgtgggcacctgtacttttgtgcacatatcca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctctaggaaattccacacacctggtatctgtgggcacctgtacttttgtgcacatatcca 739
Query: 545 taaaatataatttataataaaaataaatcttaaagacaatattcttatttagatttcttt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 taaaatataatttataataaaaataaatcttaaagacaatattcttatttagatttcttt 799
Query: 605 ttcaaatgagaatgtcagattaacaatgtcttgttaaggcctgagcgtttacgcccatga 664
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 800 ttcaaatgagaatgtcagattagcaatgtcttgttaaggcctgagcgttaacgcccatga 859
Query: 665 gcatggccttagtactttacccagatgttactga 698
||||||||||||||||||||||||||||||||||
Sbjct: 860 gcatggccttagtactttacccagatgttactga 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1093
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1083
Effective search space: 745104
Effective search space used: 745104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_l04.g1 MSMg01no529_l04.g1 CHROMAT_FILE:
MSMg01no529_l04.g1 PHD_FILE: MSMg01no529_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:46 2005
(659 letters)
>mm_chr16_18498640_18499701
Length = 1062
Score = 1210 bits (626), Expect = 0.0
Identities = 652/662 (98%), Gaps = 3/662 (0%)
Strand = Plus / Minus
Query: 1 tctcgcttctctccgccttccctgcctggcactaggtaatttcgttccttttcccgggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 tctcgcttctctccgccttccctgcctggcactaggtaatttcgttccttttcccgggct 803
Query: 61 ggacaacaatct---agaagacgcagggccgcggcgcacggtactcttcctccgaagttc 117
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ggacaacaatctagaagaagacgcagggccgcggcgcacggtactcttcctccgaagttc 743
Query: 118 tctgctcccgagacccaggagactcgggaacagaacatgcccaaagccaccatgtgcgtg 177
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 742 tctgctcccgagacccaggagacccgggaacagaacatgcccaaagccaccatgtgagtg 683
Query: 178 gaggacagactacctgcaccacccgcccgccagaaacgccatgcaggacattcagctctt 237
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaggacagactacctgcaccgcccgcccgccagaaacgccatgcaggacattcagctctt 623
Query: 238 aagctccgggacaactaagtccacctacctaggactgcgccaggaggggccgccaggatc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aagctccgggacaactaagtccacctacctaggactgcgccaggaggggccgccaggatc 563
Query: 298 agaggctccgctggagaacaccaggcagaggggcttcttccgagggcaggatcccaccgc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agaggctccgctggagaacaccaggcagaggggcttcttccgagggcaggatcccaccgc 503
Query: 358 cacctgcaaagggaagagcgagatcaggtgagcggggacgggactcttcaagacagggcc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cacctgcaaagggaagagcgagatcaggtgagcggggacgggactcttcaagacagggcc 443
Query: 418 cctacgccggctccccacctcacgcctccacacagaccccgccgcgaagatccgagcctg 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cctacgccggctccccacctcacgcctccacacagaccccgccgcgaagatccgagccta 383
Query: 478 acgcaaccagacccgagggtcttgcagccacctcgtcggccacgccccctcggcgtgcgc 537
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 382 acgcaaccggacccgagggtcttgctgccacctcgtcggccacgccccctcggcgtgcgc 323
Query: 538 ggccacccccgacgtaccggctttggcgctccgcacgccccaagttagccttcccgcggg 597
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggccacccccgacgtaccggctctggcgctccgcacgccccaagttagccttcccgcggg 263
Query: 598 gctgcgcgcgcacgttcggcccaccgcgcctgcgccgtaaacagcgaggcctccatctcg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gctgcgcgcgcacgttcggcccaccgcgcctgcgccgtaaacagcgaggcctccatctcg 203
Query: 658 ca 659
||
Sbjct: 202 ca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1062
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1052
Effective search space: 682748
Effective search space used: 682748
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
