BAC Information

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BAC

Clone NameMSMg01-529M18
Chromosome16 (Build37)
Map Location 59,067,568 - 59,068,206
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1
Downstream geneOlfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6, Epha6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529M18.T7 (MSMg01no529_m18.b1)MSMg01-529M18.TJ (MSMg01no529_m18.g1)
ACCAG598593AG598594
length775772
length of high quality
(start - end)		644 (44 - 687)676 (75 - 750)
definitionCHROMAT_FILE: MSMg01no529_m18.b1 PHD_FILE: MSMg01no529_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:54 2005CHROMAT_FILE: MSMg01no529_m18.g1 PHD_FILE: MSMg01no529_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:54 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCACTGGATCAACAGGGTTCAATGGAGGCAAAGAGATGATTCTCTAC
TGGACACTATAGGATTGGACAGAATTATAAATTGGCTCCACTGGGCACTG
TAGATTTCAAAACCATAAATATTTATTTACTGTAAATGGCTAATTTTGAC
ACAGAAATTTTTTTACTGTGCTATTTCCTATCACACTGTGACAGGTTTAA
CCAAGCTAATATACGATTTTATTTTTAAGGCATAGAATAGTGTGCTTCTC
TTGAGTTCATCAAACATGACATGATCATGTCAAAGATCACATTGCTCTCT
CTTCCTCCCTCTTCCCCTCCCTTCATCCTCCCTCCTCCCTCCTCCTCTTC
CTCACTCCTGCCCTCTCTCTTTCTTTTACAGTGTGAATTGTGATATTTAT
GCAATATTTGGTGGTTGTACTGGCTTTCTAAATGTATAATAACCCTAAAA
CCGATTCATACAAAATAAAATATGCAATGATTCCGAGGTAGCTGTGGCAG
GGTTAATCCTGTTGTACTGGTTTTCACTGCAGCTTTGGTGAACACACTGG
TGCAGTTTGCACTGCAAATGTGACTGTATGAAGCTACACAAAACTTTATT
TCAAATGCCTGATTTAGAGTACAGGTTACTGTTGGATAGGAATTGTAATT
TTTACTGTACACCCAATGTGTTTTCTGTTACATAGAACATCAATTTTATT
AACTAAAACTAAAAATAAAAAATTC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCTATAATCTAGATTCTTAAAACA
GTTCTTTCCTTGATTATGACCCTATTACATACATACAGAACTTTTACACC
TAGCCAATTTGTAATTTCATAAACTGCACAGAAAATTTAAAAGGTATCTT
TTCTTTAAATACATTAACATGTTCAAACCTTTATTGGAAAAAATGAAGTA
ATTTCTTCACTCTGAAGAAAAGTTTTCATCATATGTAGTGATATGAAATA
AATTTCATGGCCAATCTGATAACTACAGAGTTGTGTTTGAAATTCTACTA
CCCAACATTTTACTCTAAGAATTTTAGTGAATGCTGTGTGACATCAGTCA
TTTTTCATTTCAGAGACAGCCAGTGAGGACATGGAAATGGACAACACAAC
ACTGCTCATTCAGTTTGTTCTCTCAGGACTTGTTCATCTGCCCCAGTGGA
AAATCCCCCTGTTCCTGCTGTTCTTGGTCATCTATCTCATCACCATTGTG
GGCAACCTTGGTCTGATCACTCTCATCTGGAATGATCCTCACCTTCACAT
TCCTATGTACTTTTTTCTTGGGAGTTTAGCATTTGTGGATACTTGGTTAT
CATCTACAGTGACACCAAAGATGCTACAAGACATTTTTGCCAAGAATAAA
ATGATATCTTTCTCTGAGTGCATGATACATTTTTTTCATTTGCAATCAGT
GCAACCACAGAATGTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_m18.b1 MSMg01no529_m18.b1 CHROMAT_FILE:
MSMg01no529_m18.b1 PHD_FILE: MSMg01no529_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:54 2005
         (644 letters)



>mm_chr16_59067364_59068407
          Length = 1044

 Score = 1168 bits (604), Expect = 0.0
 Identities = 631/640 (98%), Gaps = 1/640 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccactggatcaacagggttcaatggaggcaaagagatgattctctactggacac 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaccggatcaacagggttcaatggaggcaaagagatgattctctactggacac 264

                                                                       
Query: 65  tataggattggacagaattataaattggctccactgggcactgtagatttcaaaaccata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tataggattggacagaattataaattggctccactgggcactgtagatttcaaaaccata 324

                                                                       
Query: 125 aatatttatttactgtaaatggctaattttgacacagaaatttttttactgtgctatttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatatttatttactgtaaatggctaattttgacacagaaatttttttactgtgctatttc 384

                                                                       
Query: 185 ctatcacactgtgacaggtttaaccaagctaatatacgattttatttttaaggcatagaa 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 ctatcacactgtgacaggtttaaccaagcgaatatacgattttatttttaaggcatagaa 444

                                                                       
Query: 245 tagtgtgcttctcttgagttcatcaaacatgacatgatcatgtcaaagatcacattgctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagtgtgcttctcttgagttcatcaaacatgacatgatcatgtcaaagatcacattgctc 504

                                                                       
Query: 305 tctcttcctccctcttcccctcccttcatcctccctcctccctcctcctcttcctcactc 364
           |||||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 tctcttcccccctcct-ccctcccttcctcctccctcctccctcctcctcttcctcactc 563

                                                                       
Query: 365 ctgccctctctctttcttttacagtgtgaattgtgatatttatgcaatatttggtggttg 424
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgccctctctctttctcttacagtgtgaattgtgatatttatgcaatatttggtggttg 623

                                                                       
Query: 425 tactggctttctaaatgtataataaccctaaaaccgattcatacaaaataaaatatgcaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tactggctttctaaatgtataataaccctaaaaccgattcatacaaaataaaatatgcaa 683

                                                                       
Query: 485 tgattccgaggtagctgtggcagggttaatcctgttgtactggttttcactgcagctttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgattccgaggtagctgtggcagggttaatcctgttgtactggttttcactgcagctttg 743

                                                                       
Query: 545 gtgaacacactggtgcagtttgcactgcaaatgtgactgtatgaagctacacaaaacttt 604
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 744 gtgaacacactggtgcagtttgcactgcaaatgtcactgtatgaaactacacaaaacttt 803

                                                   
Query: 605 atttcaaatgcctgatttagagtacaggttactgttggat 644
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atttcaaatgcctgatttagagtacaggttactgttggat 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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