Query= MSMg01no530_n03.b1 MSMg01no530_n03.b1 CHROMAT_FILE:
MSMg01no530_n03.b1 PHD_FILE: MSMg01no530_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:16 2005
(590 letters)
>mm_chr16_73436530_73437517
Length = 988
Score = 994 bits (514), Expect = 0.0
Identities = 556/570 (97%), Gaps = 2/570 (0%)
Strand = Plus / Minus
Query: 5 gaattctacaatgctacctccatggataacaaactgtcttttaaatcagctcactctgga 64
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 746 gaattctacaatgctacctccatggataacaaactctcttttaaatcagctcactctgga 687
Query: 65 acctgactagtaaaatataagcaaccaggaacctggaaaacattatcattcctaccagat 124
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 686 acctgactagtaaaatataagcaaccaggaacctggaaaacattatcattcataccagac 627
Query: 125 ttgatttccatccaaatacattttactctgaattacatgtcaacaacttacgattaaagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttgatttccatccaaatacattttactctgaattacatgtcaacaacttacgattaaagc 567
Query: 185 aagaagtcaatcacaagacaccatattcttttaacagtttaagagaagagtgtgggttgg 244
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 566 aagaagtcaatcacaagacaccatattctggtaacagtttaagagaagagtgtgggttgg 507
Query: 245 gggtggggggcaagagatgacacataacctaaattcctagctacctccaaagagcagaag 304
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 506 gggt-gggggcaagagatgacacataacctaaatttctagctacctccaaagagcagaag 448
Query: 305 gtaaagcacgataaagtgggtgtgcaaaattgcctcttccagatattcaggggatcatgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtaaagcacgataaagtgggtgtgcaaaattgcctcttccagatattcaggggatcatgt 388
Query: 365 tcttggtctagaaagacctgttacataatgatctcagtggtcaacacccacatcactata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcttggtctagaaagacctgttacataatgatctcagtggtcaacacccacatcactata 328
Query: 425 taatacaacaggaattagatctatgcttagatagatgatagatacatagatatattgcga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 327 taatacaacaggaattagatctatgcttagatagatgatagatacatagatatattgtga 268
Query: 485 gctgactgatgtgaaagataaaaaaattgtatatgcatactaatatatatgtacatgtag 544
||||||||||||||||||||||||| | ||| |||||||||||||||||||||| || ||
Sbjct: 267 gctgactgatgtgaaagataaaaaa-tagtacatgcatactaatatatatgtacgtgcag 209
Query: 545 gaaatgtgtgtgtgtgtgtgtatgtgtgtg 574
||||||||||||||||||||| ||||||||
Sbjct: 208 gaaatgtgtgtgtgtgtgtgtgtgtgtgtg 179
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 988
Length adjustment: 10
Effective length of query: 580
Effective length of database: 978
Effective search space: 567240
Effective search space used: 567240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_n03.g1 MSMg01no530_n03.g1 CHROMAT_FILE:
MSMg01no530_n03.g1 PHD_FILE: MSMg01no530_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:16 2005
(616 letters)
>mm_chr16_73402331_73403346
Length = 1016
Score = 1145 bits (592), Expect = 0.0
Identities = 610/616 (99%)
Strand = Plus / Plus
Query: 1 cctcaattctttgaaagccaaggagagtcgtgaatttagtaagtcagaggagtaagtttt 60
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 cctcaattctttgaaagccgaggagagtcgtgaatttaataagtcagaggagtaagtttt 260
Query: 61 tagttgactacaaatgagatttggcattttaaagtaggtcattaccccaacaaaatcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tagttgactacaaatgagatttggcattttaaagtaggtcattaccccaacaagatcaaa 320
Query: 121 taaagataaaatcattagggttttttctttgaaaagctctagtcaaagactcatcactta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagataaaatcattagggttttttctttgaaaagctctagtcaaagactcatcactta 380
Query: 181 catcttatattttcagcttgacttgctgctttacaaagtaatcaaaggataattttatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcttatattttcagcttgacttgctgctttacaaagtaatcaaaggataattttatat 440
Query: 241 attttaattacccgacaatgtgttcttttccataggaatttaatagatataatgcttaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttaattacccgacaatgtgttcttttccataggaatttaatagatataatgcttaaa 500
Query: 301 tgaatgaatgagtgttctggaaaaatatgccaaacaccttacccaccactgaccaaacac 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaatgaacgagtgttctggaaaaatatgccaaacaccttacccaccactgaccaaacac 560
Query: 361 agatctcatgtaaatgtcaattaaaatgttcttttacacagatgaaaagtaaaattgtta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatctcatgtaaatgtcaattaaaatgttcttttacacagatgaaaagtaaaattgtta 620
Query: 421 atagactatagactacattttcttcaagctcaagtacgcaaggatgataggaataatact 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 atagactatagactacattttcttcaagctcaagtaggcaaggatgataggaataatact 680
Query: 481 ggagctctcatgtagggagaggtgaagtagatcagccacggacattgtttgtcaaagtgt 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggagccctcatgtagggagaggtgaagtagatcagccacggacattgtttgtcaaagtgt 740
Query: 541 atacctatagacaaactgatcgctggctcaagaggtgatcttctttctcctaaagtcaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atacctatagacaaactgatcgctggctcaagaggtgatcttctttctcctaaagtcaaa 800
Query: 601 aataaataaagagccc 616
||||||||||||||||
Sbjct: 801 aataaataaagagccc 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
