BAC Information

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BAC

Clone NameMSMg01-531A01
Chromosome16 (Build37)
Map Location 4,448,975 - 4,449,595
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313
Downstream geneSrl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531A01.T7 (MSMg01no531_a01.b1)MSMg01-531A01.TJ (MSMg01no531_a01.g1)
ACCAG599508AG599509
length739820
length of high quality
(start - end)
625 (53 - 677)75 (118 - 192)
definitionCHROMAT_FILE: MSMg01no531_a01.b1 PHD_FILE: MSMg01no531_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:30 2005CHROMAT_FILE: MSMg01no531_a01.g1 PHD_FILE: MSMg01no531_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTCTGCTTGTGTGTCACAAAAAGACAGAGAGAAGCAGC
CCTGGGGATGTGTGTGTTTGGTTGGTTAGTTTTGTTTATACTGGAAGAAC
CTACTGACCAGTGGAAAAAAAATAAAAGACTCCAAACTGGAGGCACTCAA
GACCCAAGGGGAGGCAGCAGACACGTTAGCATGTCCAGAATCAAGAAGCA
ACTATACCCACAAGTTTGCTCATGCAAAGGGATGGGCAAGACTGCTAGGC
CATTTGTGGAAATAAAGAACAAATGAGTCTGAGTTTAACCAACCTTCACA
GAAACCTTGAAAAAGCCTGGCAGACCCTGAAGCATTCAGGACTCATACCC
TAGAGCTCTGCCACTAAAGTCCCCCAGCCCCCTCTCTGGCTCTGCCTCTT
CTTGTCCACCTCTTTGCTTTTCCTCCGGGTCAAGCATGCAGTTGATTTCC
ACCACATTTTCCAGTCTTCAACTGCAGAGCGATGAAGCCAGGTCTCACAG
AAGCCATTCAGCTGCTGCTGCTCTGGCAATAAGCAGAGGCTCGTGAGACG
CTGGACACACTAGAGGTCACCTGGGCAAGGCACACAAGCCGTTCCAGCCT
GAGCCTGACCTGTGAAGAACAACCAGGATCCAGAGAGGAGCGATCAGAGG
TGCTCCCTTCAGTGGACAGCATGACACAGACTTCTCGCT
CGCCCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCTGGTCTACA
GAGTTCCAGGAGCAGCCAAGGCTACACAAACACCAAAAGACAACCAACCA
ACCCACCAAGCTGCTACATGGCTGTTGGAGGGGGGGGGNNNTNNTNNGTG
GGGGGGGTGGTGTGGGGGGTGGGGGGGTTTGGGGGGGGGTTGGGGTGGGT
GTGGGCTTTTTTGGGGGGTGTGGTGGTGTTTGGTGGCCGTTGCCGCCCCG
GTGTGGTTTTGTGTGTTGCCCGGTGTATGCGTTCTCTAATGTTTGTTTCG
TTATCGGTTTTGTGGGTTTGGGGGACGCCGGGTTTTCGTGTGTTGTTGTT
TTTGTCTATTTTTTTCCGTGCTTTCTCCGCGTTTCCGCTTGTTTTTTCTT
TTTTTTGCGGCTTCTCCGTTCCGGTGCTTTCCCTTTCTCTTTCTTTGTTC
GCCTTTGGTTTGGGGTTTTTTCTCTTCCTCCTCTATTTTTCGCCCCCTGT
TCTTCTTTTTTTTTGCCTTTCCGCGCATTTGTTTTATTTTCCCCTTTGCC
CCCCTTTTGATTATTTTGGTTTTGTTTGTTTTCCTGTTGGTGTTTTTGTG
GTAGGTGAGCGCTTTGACGTTTCTCTTTTCGTGTGCATGGTGCACGTTCC
CTCAAAATGAACAAGCGTTTGTGTTCCGGCTTTTTTTTATACCTGAATTC
GCGTTTTCCACTTCCGTTTTTTTTCGTGCCTATTCTCGGCGCTCGGTTTC
TTTTTTTTCTTATGCCCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_a01.b1 MSMg01no531_a01.b1 CHROMAT_FILE:
MSMg01no531_a01.b1 PHD_FILE: MSMg01no531_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:30 2005
         (625 letters)



>mm_chr16_4448771_4449795
          Length = 1025

 Score = 1147 bits (593), Expect = 0.0
 Identities = 614/621 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctctgcttgtgtgtcacaaaaagacagagagaagcagccctggggatgtgtgtg 64
           |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattcctctgcctgtgtgtcacaaaaagacagagagaagcagctctggggatgtgtgtg 264

                                                                       
Query: 65  tttggttggttagttttgtttatactggaagaacctactgaccagtggaaaaaaaataaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttggttggttagttttgtttatactggaagaacctactgaccagtggaaaaaaaataaa 324

                                                                       
Query: 125 agactccaaactggaggcactcaagacccaaggggaggcagcagacacgttagcatgtcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agactccaaactggaggcactcaagacccaaggggaggcagcagacacgttagcatgtcc 384

                                                                       
Query: 185 agaatcaagaagcaactatacccacaagtttgctcatgcaaagggatgggcaagactgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaatcaagaagcaactatacccacaagtttgctcatgcaaagggatgggcaagactgct 444

                                                                       
Query: 245 aggccatttgtggaaataaagaacaaatgagtctgagtttaaccaaccttcacagaaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggccatttgtggaaataaagaacaaatgagtctgagtttaaccaaccttcacagaaacc 504

                                                                       
Query: 305 ttgaaaaagcctggcagaccctgaagcattcaggactcataccctagagctctgccacta 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgaaaaagcctggcagaccctgaaccattcaggactcataccctagagctctgccacta 564

                                                                       
Query: 365 aagtcccccagccccctctctggctctgcctcttcttgtccacctctttgcttttcctcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 565 aagtcccccagccccctctctggctctgcctcttcttgtccacctctttgcttctcctcc 624

                                                                       
Query: 425 gggtcaagcatgcagttgatttccaccacattttccagtcttcaactgcagagcgatgaa 484
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 625 gggtcaagcatgcggttgatttccaccacattttccagtcttcaactgcagagcaatgaa 684

                                                                       
Query: 485 gccaggtctcacagaagccattcagctgctgctgctctggcaataagcagaggctcgtga 544
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 685 gccaggtctcacagaagccattcagctgctgctgctctggcaatgagcagaggctcgtga 744

                                                                       
Query: 545 gacgctggacacactagaggtcacctgggcaaggcacacaagccgttccagcctgagcct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gacgctggacacactagaggtcacctgggcaaggcacacaagccgttccagcctgagcct 804

                                
Query: 605 gacctgtgaagaacaaccagg 625
           |||||||||||||||||||||
Sbjct: 805 gacctgtgaagaacaaccagg 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)