BAC Information

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BAC

Clone NameMSMg01-532C07
Chromosome16 (Build37)
Map Location 43,450,255 - 43,450,837
singlet/doubletsinglet
Overlap genenone
Upstream geneBC002163, LOC667484
Downstream geneZbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532C07.T7 (MSMg01no532_c07.b1)MSMg01-532C07.TJ (MSMg01no532_c07.g1)
ACCAG600373AG600374
length1,094749
length of high quality
(start - end)
---583 (80 - 662)
definitionCHROMAT_FILE: MSMg01no532_c07.b1 PHD_FILE: MSMg01no532_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:59 2005CHROMAT_FILE: MSMg01no532_c07.g1 PHD_FILE: MSMg01no532_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAAATTGGGGGGGGGGTGAGCCAACCCCCTAGGGTGTTGCCAGAGAAG
GGGGGAAGTCCCTCGGGGGTTTTTGGCGCAGAAGAGAAACCCCACGGGAA
ATTTTCTTCCTTAAAAATTTTTTTTTTTGTTGCGACAAAAAAAAAAAAAC
ACATTTTAACCCCCTCCCCCCCGGTGGTGGGGGGGAGAAAAAGAGGGGGC
GGGGTGTTTTGTTGAAATTTTTTGGGTGAATAAAAACAAAAAAAAAAAAA
AAGGTTCCCCTGCCTCCTGCTTTTGATAAAAAAAAAGCAGCCAGGAAATA
AAAATTGGGCCTCCATTTTACAAAATCTGGAAAAGAACTTCAAAAAAGTG
GTTTTCTATAATCTCAGATATAAAAAAAAAAATACTACTGACCGACCTTG
CGCGATAAATGGTAAATTGGATGAAGCACCACCTTAGGGACAATGTGAAA
TTCCAATTTTCAACTTGGAATCCAATAACACAGTGTTGGAGCCATTGGGG
TTGGGTTCAATAAATGGATAGTTATGTAAGGTTTGGGAGGCTCCATAAGG
TAAAATTAAGGTCTTGGGAACTTTTGGGACACTATTATTTAATTCATAAC
TGTGTTTGTAGGTGTTGGCACTGGGGTTCATTAATATTGGGGAATAACAT
GTTTCTCTCGTCCTTGGAAGTTTATAATCCAAATCTTCTTTTCTATGAAA
CTCGTGCATCAAGTGGTGTTCGTTAACCTATTGAATAATATTTTGGATTG
TTTAGGTACAACACTCCTTATTAGGGGCGTCCTGGAGAATTTGATTCCCA
AATAGACTTGAAATATATTAGTTTGAAGGGTGTTGTGGATGTCTTCTCTT
TCGGGGATGGTGCAAGTGCTCGCAACAGCGCGCGCAGTATAAATAAGAGA
GAGGACGAACCGNCNCNCTNTNNTTGTTTACNTATAAATGATTAGGAGTG
TTTTATTGCTCTGCCAGATAACGGTGACTTTATGTACGGTCCGCCCACGA
TGTGGTATATTCATAAACTGTGAATTGTATAATGATTATATATATCATAT
ATATATAACCACACTCATTGATCTTTTATCAAGGAGATTATCGG
TGGCCAATGATAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATTTTTTCCCTTTTTTCCC
TACTCCTGATCCTCTTATAGCTTCTCTAGCAATCCTAAAACCCAGCTGGT
CTAGAGATTAATATGACCAGACATACCATGAATTTTTTAAATCTCAAAAG
TCCCAGTTTCTGCTTCTTCATCAATCAAATATAGGTTATATATGTGTGTA
TGTGTGCAGTATATTATCCTAAGCCTCTCAGTTCTTTTCTTTTTCCTTCA
CTTCCTCTTAAATTATTCCCATTACTTGTTATAAATAGGTAGAAGAAAAA
AATGTGAGGAACAGAGGGACAAAAGGTGTGAAGTAGTAGAAGACAGTAAC
AGCGAGAGTGCTCAGAAGAAGGGGACCAGTGAGAAGATGGAAGGTGTTGT
AGCTGTCCACTTCCTTAGTCTCTTCAGACCACTTCCGGGTTTGACGTTGT
TAGCCTTTTCACCTAATGCCCTCAAATAACTTTTTCTCACTGCTAGCAAA
CTCCTTCTACCTGCTTCACACATGGAAATCTCCAGGCCAGCATCTTGACA
TATTACCCAGGCTACCAAGCCCCTTGTTCATTGACTCAGGGGACTTGGAC
CTTATTGCTACGGNGTCCACCAACTCCCTGCCCTGGATTGGCATGGACAG
TGTTAATGGATGATGTAAGCCTGGAATAACTTAAGCAATATTTTGGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_c07.g1 MSMg01no532_c07.g1 CHROMAT_FILE:
MSMg01no532_c07.g1 PHD_FILE: MSMg01no532_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:59 2005
         (583 letters)



>mm_chr16_43450055_43451037
          Length = 983

 Score = 1112 bits (575), Expect = 0.0
 Identities = 581/583 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattttttcccttttttccctactcctgatcctcttatagcttctctagcaatcctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattttttcccttttttccctactcctgatcctcttatagcttctctagcaatcctaaa 260

                                                                       
Query: 61  acccagctggtctagagattaatatgaccagacataccatgaattttttaaatctcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acccagctggtctagagattaatatgaccagacataccatgaattttttaaatctcaaaa 320

                                                                       
Query: 121 gtcccagtttctgcttcttcatcaatcaaatataggttatatatgtgtgtatgtgtgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcccagtttctgcttcttcatcaatcaaatataggttatatatgtgtgtatgtgtgcag 380

                                                                       
Query: 181 tatattatcctaagcctctcagttcttttctttttccttcacttcctcttaaattattcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatattatcctaagcctctcagttcttttctttttccttcacttcctcttaaattattcc 440

                                                                       
Query: 241 cattacttgttataaataggtagaagaaaaaaatgtgaggaacagagggacaaaaggtgt 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattacttgttataaataggtaggagaaaaaaatgtgaggaacagagggacaaaaggtgt 500

                                                                       
Query: 301 gaagtagtagaagacagtaacagcgagagtgctcagaagaaggggaccagtgagaagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagtagtagaagacagtaacagcgagagtgctcagaagaaggggaccagtgagaagatg 560

                                                                       
Query: 361 gaaggtgttgtagctgtccacttccttagtctcttcagaccacttccgggtttgacgttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaggtgttgtagctgtccacttccttagtctcttcagaccacttccgggtttgacgttg 620

                                                                       
Query: 421 ttagccttttcacctaatgccctcaaataactttttctcactgctagcaaactccttcta 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 ttagccttttcacctaatgccctcaaataactttttctcactgctagcaaactctttcta 680

                                                                       
Query: 481 cctgcttcacacatggaaatctccaggccagcatcttgacatattacccaggctaccaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgcttcacacatggaaatctccaggccagcatcttgacatattacccaggctaccaag 740

                                                      
Query: 541 ccccttgttcattgactcaggggacttggaccttattgctacg 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccccttgttcattgactcaggggacttggaccttattgctacg 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)