BAC Information

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BAC

Clone NameMSMg01-532E22
Chromosome16 (Build37)
Map Location 19,186,117 - 19,186,790
singlet/doubletsinglet
Overlap geneIgl
Upstream geneEG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1
Downstream geneIgl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532E22.T7 (MSMg01no532_e22.b1)MSMg01-532E22.TJ (MSMg01no532_e22.g1)
ACCAG600499AG600500
length759765
length of high quality
(start - end)		675 (50 - 724)576 (81 - 656)
definitionCHROMAT_FILE: MSMg01no532_e22.b1 PHD_FILE: MSMg01no532_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:12 2005CHROMAT_FILE: MSMg01no532_e22.g1 PHD_FILE: MSMg01no532_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:12 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NGGGATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTAGACAGTCTCACAGCTGGTCGTGTCAGTGCTTCTATAC
ACCCCCAGGTACTTTGGTAGTCAAAGCTGAAGCAGAGGGAGTTCATGGCC
AGCTTAAGCAATGTATCAAACATACTGTCTCACAATAAAAGTAAAGAATA
GGTCTTGGGATGAAAGTCAGAGATAAACTCTGGCTTACCATATTAAAGTC
TCAGGGTCCAACCCCAAATAATGAGAGGGAGTTTGTTTAATGTCTTACTG
GTATCTACAAATGTGATTTTTATAGCTTTTGAAATATTTAAAGTAAACAA
TTTATTCCTACATTTATGCAATTATGTTAAAATCTTTTCATATCTTTGTT
TTCACCAAAGGGTTTTTGTTTTACAAAGCATATTATGAGTTGGCTTATGT
GATGCACTGTCCAAGCTTCACACAAAGTAAAAAAACAACAAAAAAAAAAC
AAAAAAAAACATACAAAACATAAAACAGAAGTAAAGTGTTACAGTAACCT
TTGCTGTGTTTAGTTACCAAGCAATCATAATATATCATTATAAATATATT
TCATAATATTGTTTATAAGACATTTTTTCCTCAATTATCAACAGCATTTT
AATGAAAACTTTATTATAAAGAGCTTACAAATTAAAAGTACATCCTGCAG
CAAGAGTAGATAGACTGAAGGTGATTAGCCACACACTGGCTTTTACACCT
AAACTATCA

NNNNCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGCCATTATGCCTCAAGA
GCTCCATACCAAGATCCTGGTCAGAAACTTCTATGTCCCATCCTCCAGAT
TAGAATCACTGGTGAGCCTTCCAATTCTGGATTGTGGTTCATTCCGGATA
TAGTCAAGTTGACAATCAGGAATAGCCAATACACAAACCCACCTACTCCT
GCATCCTGGCCCTGACATTCCCCTATACTGGGGCATAGAACTTTCACAGG
ACCAAGGGACTCTCCTCCATTTGATGATCGACTAGGCTATCCTCTGCTAC
ATATGCAGCTAGAGACATGAGTCCCACCATGTGTTTTCTTTGGTTGGTGA
TTTAGTCCCAGGGAGCTCTAGGGGGTACTGGTTAGTTCATGTTATTGTTG
CTCCTATGGGGCTGCAAACCCCATTCATTTCCTTGGGTACTTTCTCTAGC
TCCTTAATTGGGGACCCTGTGCTCTGTCCAATGGATAACTGTGAGCATCC
ACTTCTGTATTTGTCAGGCACTGGCAGAGCCTCTGAGGAGACAGCTATAT
CAGGCTCCTGACAGCAAAAGCTTGTTGGCATCTGCAATAGTGTCTGGGTT
TGGTGGTTGTTTTATGGGATGGATCCCACGTGGAGCAGTCTCTGGATGGC
CATTCCTTCAGACTCTGCTCTGAACTATGTCTCTGCAATTTCTTCCATGG
GGATTTTCCCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_e22.b1 MSMg01no532_e22.b1 CHROMAT_FILE:
MSMg01no532_e22.b1 PHD_FILE: MSMg01no532_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:12 2005
         (675 letters)



>mm_chr16_19185916_19186990
          Length = 1075

 Score = 1187 bits (614), Expect = 0.0
 Identities = 659/674 (97%), Gaps = 2/674 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctagacagtctcacagctggtcgtgtcagtgcttctatacacccccaggtac 63
           |||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct: 202 ggaattctctagacagacttacagctggtcctgtcagtgcttctatacacccccaggtac 261

                                                                       
Query: 64  tttggtagtcaaagctgaagcagagggagttcatggccagcttaagcaatgtatcaaaca 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 262 tttggtagtcaaagctgaagcagagggagttcatggccagcttaagcaatgtatcataca 321

                                                                       
Query: 124 tactgtctcacaataaaagtaaagaataggtcttgggatgaaagtcagagat-aaactct 182
           |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 322 tactgtctcacaataaaagtaaagaataggtcttgggatggaagtcagagattaaactct 381

                                                                       
Query: 183 ggcttaccatattaaagtctcagggtccaaccccaaataatgagagggagtttgtttaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 382 ggcttaccatattaaagtctcagggtccaaccccaaataatgagagggaatttgtttaat 441

                                                                       
Query: 243 gtcttactggtatctacaaatgtgatttttatagcttttgaaatatttaaagtaaacaat 302
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 442 gtcttactggtatctacaaatgtgatttttataccttttgaaatatttaaagtgaacaat 501

                                                                       
Query: 303 ttattcctacatttatgcaattatgttaaaatcttttcatatctttgttttcaccaaagg 362
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttattcctacatttatgcaattacgttaaaatcttttcatatctttgttttcaccaaagg 561

                                                                       
Query: 363 gtttttgttttacaaagcatattatgagttggcttatgtgatgcactgtccaagcttcac 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtttttgttttacaaagcatattatgagttggcttatgtgatgcactgtccaagcttcac 621

                                                                       
Query: 423 acaaagtaaaaaaacaaca-aaaaaaaaacaaaaaaaaacatacaaaacataaaacagaa 481
           ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 622 acaaagtaaaaaaacaaaacaaaaaaaaacaaaaaaaaacaaacaaaacataaaacagaa 681

                                                                       
Query: 482 gtaaagtgttacagtaacctttgctgtgtttagttaccaagcaatcataatatatcatta 541
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 682 gtaaagtgttacagtaacctttgctgtgtttagttaccaagcaatcataacatatcatta 741

                                                                       
Query: 542 taaatatatttcataatattgtttataagacattttttcctcaattatcaacagcatttt 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 taaatatatttcataatattgtttataagacattttttcctcaattatcaacagcatttt 801

                                                                       
Query: 602 aatgaaaactttattataaagagcttacaaattaaaagtacatcctgcagcaagagtaga 661
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 802 aatgaaaactttattataaagagcttacaaattaaaagtacatcatgcagcaagagtaga 861

                         
Query: 662 tagactgaaggtga 675
           ||||||||||||||
Sbjct: 862 tagactgaaggtga 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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