BAC Information

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BAC

Clone NameMSMg01-532G05
Chromosome16 (Build37)
Map Location 25,461,368 - 25,630,842
singlet/doubletdoublet
Overlap genenone
Upstream geneLpp, A730098P11Rik, 5430420C16Rik
Downstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532G05.T7 (MSMg01no532_g05.b1)MSMg01-532G05.TJ (MSMg01no532_g05.g1)
ACCAG600560AG600561
length744754
length of high quality
(start - end)		245 (78 - 322)554 (80 - 633)
definitionCHROMAT_FILE: MSMg01no532_g05.b1 PHD_FILE: MSMg01no532_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:18 2005CHROMAT_FILE: MSMg01no532_g05.g1 PHD_FILE: MSMg01no532_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,630,612 - 25,630,842)(25,461,368 - 25,461,921)
sequence
NGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGGTGCC
GCGGAATCAAAGTTGGTACCTGAGAACATGGGGGAAAATAGTCTCTCTCT
CTCTCTCTCTCCACTCTCTCTCTCTCTCTCTTTGACTTAAGAGAATGAAA
GATATAAATCAATGAGGGCTGATCTGCTTTGTGATCTGATTCACCAAATA
AAACAAATTAACTTGAAAATATGCTATTATTAGCAAAATTTTCATAATTC
CTTGGGGGAAGTGGAAATTGCAAAACCGATTAATGAACAATACTTCTGTA
AGTCTTCTAAATCTTAATAGAAGTCTTATGTCTTAAGGCGTGATTCACCT
CTGCATCCACACCCATATATATCAAAAAGTAGCTTCGTCTTTTGTCCTAG
AGCTTCTGTGATGAGTGTAGTTCTCTATTGCCTCACTTTGAGGACATACT
AAGAGAAAGGGGGAAAGAGTATTGAGCAACTGATAAGAACAAAAATGAAA
TGAATCTGCAGCATCTAACATTGTCATCCAAGCTTCCTGCCGCGTGGATT
CACGTGACCCAGGCATTTGGGCATGGACGAAAGAATCCAGCATACAGAAT
TTGGTAGGACTGAATTCTGCATTACTGCTAAAGCAACACTGAGCATTTTG
CTTATGCCTCATTAGAAAAAAAAATATCANGAACTTTTTCCAATTAGGAT
TTTGCTATCTTGATTTTGAAGGGCTTAATTTCATGTTCAGTGGG

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAATGGGTTCTCGGTCT
TACCCTATAAACAAACAGAAAAGGACAGAGAAGTATTTCTAAGGGAGGTT
TTAAAGGATCAGAAACTGGGGTTGAAGAAAAGATGGTAAAGCTGAATTTT
AATGTGGAGTGTCATTTTTCAAATGTCTCCTAATTATATTGCAGAGCATG
TTGAAAAGGGCCAAAATATTAATGTGCTTAACACCAAGGCAGTTATGTGA
TTATTGTGTCATGCAAATGTATCTTGGTTTCAGCTGACATCAACACTGCA
AAATTGTAGTCCCTGTCCTTGGGTTGACCTCAAATGCTTCTGCAATACAA
AGACTGGTTCTGCTAAGGCACACATGAAATTCAGAATGGGGATCTTGCTG
TGTGCCACCCTTCTTTGAGTTTTAGAGGTTAACTGTTAGGATGTCCTCTA
ACCCAGAAATTTAATTTTTCATACTCATTCACTCAGCAAAGGCTTCTGTA
GTACTTACTATCCAGTGTTAATCACTGTGGGAAAATAAGTTAGTTGGGTA
TTGTTCTGTCTTCAAGGAGCTCTTATGGAAGGTACAATTCAACAGGCAAC
AATAAGAATATAGTGTCTATGGTGTTGTACAACAGAAGAATGGTTGGGAG
CTGACATTCGCAGATTTTAATGATTGATAGAGACCAAGTATTAAGAGAGA
CTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_g05.b1 MSMg01no532_g05.b1 CHROMAT_FILE:
MSMg01no532_g05.b1 PHD_FILE: MSMg01no532_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:18 2005
         (245 letters)



>mm_chr16_25630358_25631002
          Length = 645

 Score =  431 bits (223), Expect = e-125
 Identities = 229/231 (99%)
 Strand = Plus / Minus

                                                                       
Query: 15  tctctctctctctctctctccactctctctctctctctctttgacttaagagaatgaaag 74
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tctctctctctctctctctcctctctctctctctctctctttgacttaagagaatgaaag 426

                                                                       
Query: 75  atataaatcaatgagggctgatctgctttgtgatctgattcaccaaataaaacaaattaa 134
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atataaatcaatgaaggctgatctgctttgtgatctgattcaccaaataaaacaaattaa 366

                                                                       
Query: 135 cttgaaaatatgctattattagcaaaattttcataattccttgggggaagtggaaattgc 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cttgaaaatatgctattattagcaaaattttcataattccttgggggaagtggaaattgc 306

                                                              
Query: 195 aaaaccgattaatgaacaatacttctgtaagtcttctaaatcttaatagaa 245
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aaaaccgattaatgaacaatacttctgtaagtcttctaaatcttaatagaa 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no532_g05.g1 MSMg01no532_g05.g1 CHROMAT_FILE:
MSMg01no532_g05.g1 PHD_FILE: MSMg01no532_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:18 2005
         (554 letters)



>mm_chr16_25461168_25462121
          Length = 954

 Score = 1048 bits (542), Expect = 0.0
 Identities = 551/554 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagaaatgggttctcggtcttaccctataaacaaacagaaaaggacagagaagtatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagaaatgggttctcggtcttaccctataaacaaacagaaaaggacagagaagtatttc 260

                                                                       
Query: 61  taagggaggttttaaaggatcagaaactggggttgaagaaaagatggtaaagctgaattt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 taagggaggttttaaaggatcagaaactggggttgaagaaaagacggtaaagctgaattt 320

                                                                       
Query: 121 taatgtggagtgtcatttttcaaatgtctcctaattatattgcagagcatgttgaaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatgtggagtgtcatttttcaaatgtctcctaattatattgcagagcatgttgaaaagg 380

                                                                       
Query: 181 gccaaaatattaatgtgcttaacaccaaggcagttatgtgattattgtgtcatgcaaatg 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gccaaaatattaatgtgcttaacaccaaggcagttatgtgattattgtctcatgcaaatg 440

                                                                       
Query: 241 tatcttggtttcagctgacatcaacactgcaaaattgtagtccctgtccttgggttgacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcttggtttcagctgacatcaacactgcaaaattgtagtccctgtccttgggttgacc 500

                                                                       
Query: 301 tcaaatgcttctgcaatacaaagactggttctgctaaggcacacatgaaattcagaatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaatgcttctgcaatacaaagactggttctgctaaggcacacatgaaattcagaatgg 560

                                                                       
Query: 361 ggatcttgctgtgtgccacccttctttgagttttagaggttaactgttaggatgtcctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggatcttgctgtgtgccacccttctttgagttttagaggttaactgttaggatgtcctct 620

                                                                       
Query: 421 aacccagaaatttaatttttcatactcattcactcagcaaaggcttctgtagtacttact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacccagaaatttaatttttcatactcattcactcagcaaaggcttctgtagtacttact 680

                                                                       
Query: 481 atccagtgttaatcactgtgggaaaataagttagttgggtattgttctgtcttcaaggag 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 atccagtgttaatcactgtgggaaaataagttggttgggtattgttctgtcttcaaggag 740

                         
Query: 541 ctcttatggaaggt 554
           ||||||||||||||
Sbjct: 741 ctcttatggaaggt 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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