BAC Information

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BAC

Clone NameMSMg01-532H05
Chromosome16 (Build37)
Map Location 54,353,886 - 54,354,512
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433027, LOC100043442
Downstream geneLOC100043449, LOC667927, LOC436421, Zpld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532H05.T7 (MSMg01no532_h05.b1)MSMg01-532H05.TJ (MSMg01no532_h05.g1)
ACCAG600606AG600607
length760755
length of high quality
(start - end)
673 (49 - 721)628 (77 - 704)
definitionCHROMAT_FILE: MSMg01no532_h05.b1 PHD_FILE: MSMg01no532_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:22 2005CHROMAT_FILE: MSMg01no532_h05.g1 PHD_FILE: MSMg01no532_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGTTGCATACCAAATGGCTGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAACGCATATCAAAACAACCCTGAG
ATTCCATCTTATACCAGTCAGAATGGCTAAGATTAAAAATTCAGGTGACA
TCAGATGCTGGCGAGGATGATGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGGAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCT
CTGAAAATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAAGATGTTCCAACCGGTAAGAAAGACGCATGCTCCACT
ATGTTCATCGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATTCCCCTCAACAGAGGAATGGATACAAAAAAATGTGGTACATTTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGG
CAAATTGATGGACTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACA
AAAAAACCTCAAAGGATATGTTCTCACTGATAAATGGCTATTAGCCCAGA
AACTGAGAATACCCAGGATATAAGATACAATTTGCAAAACACATGAAACT
CAAGAAGAATGAAGACCAACGTGTGGACACTTTGCCCCGTTCTTAGAATT
GGGAACAAAN
TCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCACCATGAAAATGACACAGCTG
CTTACTTGAAGCAATTTGATGCAACCAATTTAAAAATCAATTGGTATATT
TTAACTCCAGAATATTTCTACTTACTTTAGTTTAATACATTTTGTTTTAG
ACTCACTGACAAACCTAATGTTCTAGAGAAAAACTGTTATGAAAGGATTG
TGAAAGGGGGAAGCCACATCAAGGTATGTGAAAATGATACTGTAATTCAT
ATATGATAATGTTAGGAAATAACTAAAATACAATTTTCTCATTATTTTGT
CACAGTTCTCTCACATTTAATGAGTGTGTGGGAAGCGTAGGGCAGCATAA
TTGATACAGCAGCCTGGTATGTCTGTGTCTCATAAGGAAAGAGATAAAAA
TGCAATAATTTTTCTTAGACTAAGACCTGCCTTATAAGTAGACACTATGA
TATAGTTCCTGAAAACGACTTTAATAATTAACCCAATAATTGATATTTAG
CAGGCTCTAAGCAAATATCAAATACACACAGGAACAACTGAGAGGAGACA
TGGGTCTCTGAAGTCATATTTGCTGAAAAATGTTTACAAGGCCCAGTGAG
ACGTCATTATGTAATCTATCAGTTTGAAATCTGCATTAGGCTAGAGTATC
CATTCCCAATGCTGGATAATGTCTTAGCTTTCAGCTATACAGAACTACTA
AGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_h05.g1 MSMg01no532_h05.g1 CHROMAT_FILE:
MSMg01no532_h05.g1 PHD_FILE: MSMg01no532_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:22 2005
         (628 letters)



>mm_chr16_54353686_54354712
          Length = 1027

 Score = 1176 bits (608), Expect = 0.0
 Identities = 623/628 (99%), Gaps = 1/628 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaccatgaaaatgacacagctgcttacttgaagcaatttgatgcaaccaatttaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaccatgaaaatgacacagctgcttacttgaagcaatttgatgcaaccaatttaaaaa 260

                                                                       
Query: 61  tcaattggtatattttaactccagaatatttctacttactttagtttaatacattttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaattggtatattttaactccagaatatttctacttactttagtttaatacattttgtt 320

                                                                       
Query: 121 ttagactcactgacaaacctaatgttctagagaaaaactgttatgaaaggattgtgaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagactcactgacaaacctaatgttctagagaaaaactgttatgaaaggattgtgaaag 380

                                                                       
Query: 181 ggggaagccacatcaaggtatgtgaaaatgatactgtaattcatatatgataatgttagg 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ggggaagccacatcaaggtatgtgaaactgatactgtaattcatatatgataatgttagg 440

                                                                       
Query: 241 aaataactaaaatacaattttctcattattttgtcacagttctctcacatttaatgagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaataactaaaatacaattttctcattattttgtcacagttctctcacatttaatgagtg 500

                                                                       
Query: 301 tgtgggaagcgtagggcagcataattgatacagcagcctggtatgtctgtgtctcataag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgggaagcgtagggcagcataattgatacagcagcctggtatgtctgtgtctcataag 560

                                                                       
Query: 361 gaaagagataaaaatgcaataatttttcttagactaagacctgccttataagtagacact 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 gaaagagataaaaatgcaataatttttcttagactcagacctgccttataagtagacact 620

                                                                       
Query: 421 atgatatagttcctgaaaacgactttaataattaacccaataattgatatttagcaggct 480
           | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acgatatagttcctgaaa-cgactttaataattaacccaataattgatatttagcaggct 679

                                                                       
Query: 481 ctaagcaaatatcaaatacacacaggaacaactgagaggagacatgggtctctgaagtca 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctaagaaaatatcaaatacacacaggaacaactgagaggagacatgggtctctgaagtca 739

                                                                       
Query: 541 tatttgctgaaaaatgtttacaaggcccagtgagacgtcattatgtaatctatcagtttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tatttgctgaaaaatgtttacaaggcccagtgagacgtcattatgtaatctatcagtttg 799

                                       
Query: 601 aaatctgcattaggctagagtatccatt 628
           ||||||||||||||||||||||||||||
Sbjct: 800 aaatctgcattaggctagagtatccatt 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1027
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1017
Effective search space:   628506
Effective search space used:   628506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)