BAC Information

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BAC

Clone NameMSMg01-534M19
Chromosome16 (Build37)
Map Location 19,285,128 - 19,285,687
singlet/doubletsinglet
Overlap genenone
Upstream geneDgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2
Downstream geneOlfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534M19.T7 (MSMg01no534_m19.b1)MSMg01-534M19.TJ (MSMg01no534_m19.g1)
ACCAG602400AG602401
length785796
length of high quality
(start - end)		596 (35 - 630)556 (67 - 622)
definitionCHROMAT_FILE: MSMg01no534_m19.b1 PHD_FILE: MSMg01no534_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:26 2005CHROMAT_FILE: MSMg01no534_m19.g1 PHD_FILE: MSMg01no534_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAGTA
TCTACTTTTAATAGAAAGCTGTCCAATAAAATACCATTGTAATGTCCTAC
CTCAAGGAATGTTAAACAGTACTACCTTGTGCCAATATTTTGTCAAACAA
CCATTAGAGATAATTTCCTCAATCTATAATTTACCAGTATATGGATGATA
TCTTATTGATTGGTTCAGATACAAATAACTTGGAAAGAATATTTGATGAA
AAAAAGAAAACCTTGTCTCACTGGGTATTACAAATTGCTTCTGATAAAAA
ACAGAGTGGAGATTCTATTAATTACATAGGATATTAAATAAGTCTATGAA
ATATTAGACAACAAATTCTACAAGTTAGGAGAGACCAATTAAGGACTCGT
AATGTTTTCCAATCATACTCGTAATGTTTTCTAGAAATGATTGGGAGATA
TTAGCTGATTTATGCTTACAATTGACCTGACTACTCAAGAACTAAGTATT
TTTTTTCAAACTTTGCACATGATAAAGACTTAAATAGCCAAAACAAAATT
ATCAACTGAGGCTGAAAAGGAGTTGGCTCTGATAGAAAAGAAACTACAGG
ATACACATCTTTGTATATTAATCTAAAGATAGCCTTTGTCTTAGTTATCT
TGTCTTCTAGTTGGTCTACCACAGGAATTCTTATACAGAGAGAAGATGAT
ATCTTAGAACAGACATTTTTAGTACAAAGAGTAAAAAGAATAAAAATCTC
TATAGGAAAAGGTTTATGAATTGATACTAAAAGGA

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAAAAACTAGAATTTCTCATCATTGTAACTGTCA
AAATTTGTCTATTCTTTTCCGTTCAAATATGACATTTTTGCTGCAAATTC
AATGTAATATTATCAGTAATAACAATTTGCCTATACAGTGCATGCTTATA
TATAATATTTGAAATTTTCCCTTGAGTTCAAACTACTTTAAATGTACAGT
TTTGTTAAAATGCAGCTACTAATTTTCTACTAATTCTTATCTATTTATTC
AGTTGTGAGAATAAAAATAAGTGAAAGTAACTGTCAAATGACAAAAGAGA
CAGACAAGATTGAGATGTAGGCAAGCCATGTATATTATTCTGCAGAATAC
TTGAGAATGAGGTTTGATTAATTTTATTCTTATGTAGGCATTCATATCCT
ACACAAGAGAGTGAGAAAATAATAAAAAGTTATAAACATATTATGTTTTG
TTTTCATGCATCACCTGTCAATTAAAAAAATATGACTATAGAAAATGGTA
GAATAGAATGTGGGACATCTACAAGGCAAAACAGATTCTGGGAAAGAGCC
AGGCATTGGAGATCTGCCTGTGAAGATGATACATGTGATGGATGCATGGG
ACATAAGAACAGGAAAACAGATATGTGGCAGAATGTAGATTATAATAAAT
GGGAATATTTATGATCTATAAGAGAAAACCCTAGCCATATTGCCGATGTA
TTTGTAAATATATCTTGAGTCTGAGACTTTACTTCTGGAACATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_m19.g1 MSMg01no534_m19.g1 CHROMAT_FILE:
MSMg01no534_m19.g1 PHD_FILE: MSMg01no534_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:26 2005
         (556 letters)



>mm_chr16_19285066_19286025
          Length = 960

 Score = 1013 bits (524), Expect = 0.0
 Identities = 550/560 (98%), Gaps = 4/560 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaaactagaatttctcatcattgtaactgtcaaaatttgtctattcttttccgttcaa 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 622 caaaaactagaatttctcatcattgtaactgtcaaaatttttctattcttttccgttcaa 563

                                                                       
Query: 61  atatgaca-tttttgctgcaaattcaatgtaatattatcagtaataacaatttgcctata 119
           |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 562 atatgacattttttgctgcaaattcaatgtaatattatcagttataacaatttgcctata 503

                                                                       
Query: 120 cagtgcatgcttatatataatatttgaaattttcccttgagttcaaactactttaaatgt 179
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 502 cagtgcatgcttatatataatatttgatattttcccttgagttcaaactactttaaatgt 443

                                                                       
Query: 180 acagttttgttaaaatgcagctactaattttctactaattcttatctatttattcagttg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acagttttgttaaaatgcagctactaattttctactaattcttatctatttattcagttg 383

                                                                       
Query: 240 tgagaataaaaataagtgaaagtaactgtcaaatgacaaaagagacagacaagattgaga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgagaataaaaataagtgaaagtaactgtcaaatgacaaaagagacagacaagattgaga 323

                                                                       
Query: 300 tgtaggcaagccatgtatattattctgcagaatacttgagaat---gaggtttgattaat 356
           ||||| |||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 322 tgtagacaagccatgtatattattctgcagaatacttgagaatgaggaggtttgattaat 263

                                                                       
Query: 357 tttattcttatgtaggcattcatatcctacacaagagagtgagaaaataataaaaagtta 416
           ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 262 tttattcttatgtaggcattcatatcctacacaggaaagtgagaaaataataaaaagtta 203

                                                                       
Query: 417 taaacatattatgttttgttttcatgcatcacctgtcaattaaaaaaatatgactataga 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 taaacatattatgttttgttttcatgcatcacctgtcaattaaaaaaatatgactataga 143

                                                                       
Query: 477 aaatggtagaatagaatgtgggacatctacaaggcaaaacagattctgggaaagagccag 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aaatggtagaatagaatgtgggacatctacaaggcaaaacagattctgggaaagagccag 83

                               
Query: 537 gcattggagatctgcctgtg 556
           ||||||||||||||||||||
Sbjct: 82  gcattggagatctgcctgtg 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 960
Length adjustment: 10
Effective length of query: 546
Effective length of database: 950
Effective search space:   518700
Effective search space used:   518700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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