BAC Information

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BAC

Clone NameMSMg01-535G22
Chromosome16 (Build37)
Map Location 59,983,273 - 60,069,115
singlet/doubletdoublet
Overlap geneEpha6
Upstream geneOlfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6
Downstream geneLOC100043804, EG668168, LOC668170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535G22.T7 (MSMg01no535_g22.b1)MSMg01-535G22.TJ (MSMg01no535_g22.g1)
ACCAG602883AG602884
length781791
length of high quality
(start - end)		512 (51 - 562)424 (77 - 500)
definitionCHROMAT_FILE: MSMg01no535_g22.b1 PHD_FILE: MSMg01no535_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:15 2005CHROMAT_FILE: MSMg01no535_g22.g1 PHD_FILE: MSMg01no535_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,068,610 - 60,069,115)(59,983,273 - 59,983,696)
sequence
NNNAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTAGGAGCTCAGAAGTACAAGATCAATTCCCTCTGAAGT
GATCAAAGCAGTCTTAAGCTGATCTCTTCTATCTAAAGGGGGAAAATGGT
AATTGCTGCTATTTTATTTCGTGTATGAATGGAAGTCTCTTAAATGCGAA
CTCTTCTAAAAAGCCCGAGGACACATCCACGGGTTGTTTTCTACTGCCGA
AAGATGACTCTAATTTTCTTGTCTGTTTGTGCACCTTAGGGGTGCCGTGG
GAAAGGATTTTTTATTTCTTGATATACCCAGGAAGCGAATCCATAGCACT
TACAAGTCTAATTTTCATAAAGCTTCTTCTCTTAAAATACAAAGTCCATT
TTTTTAGCTAGCTTTTGCTGCAATTTCATATTATTATATAAATTGAAGAA
TGTCAGTACAGAGCCAGACTAACAGCTGATGACTCCTCTGTGAGCCACAT
GCATGTGGATACCATTTACAAATGCACTTGTTTTTAAGAAATGCCANGGT
GAGGAGGTGGAGGNTTTGTGGGGGGNNATGGGNNNNNNNNNNNNNNNNNN
NNNNNGNNNNGNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGNNNNNNNNNNGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT

TTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGACTTCATGAACAATGAGACTAT
GTCTTATGTTGCCTTATTGAGTGTACCAGTCTGTCTTCACCAGTTATAAT
ATGCAACCAAGTTCCTCATAGACAAGCCAGTGACACTGTGTGACACTAGT
GTCTTCTTTTGCTTTGCTAGCACATCTCCATTACCTCCCTACCACCTATA
TTCATAAAATCTTCCAGATAACTTAATTTCCAAGATTTCTGCAACAATTT
CATTGCAGGCTTGACATGAGGTGGCTTTGCTGTACTTTTCTCTGGAGTGT
CTGGTAAAAAGGCCATAATTCACTGTGTCTTGAAATTCCAAAGACTAAAT
ATGAACTGTCAAGGAGAGATATGCAGGTTTGCATGATTGCAGAAAGCAAG
CATGAGTTAGAATTTAAATTGATAATTCCTAANGTTCCCGTATTTTCAGT
ATGTGAATTCTGAANGCTGAAATAGTCTCTAGGGAAGTGGAAAGTGATGA
CAGCTACNGGATGACNATTAAAAGATAGTTAGAAAAGTTATTTTTGTTGA
TTTAAATAAGGAAAGAAATATCAGATGTGTAGCTTTGGTTCAGACAAGTA
CTATGGAAGCTGCCCGGAAACTTGCTTTTGCCCAATACAAAGCGGAAAAA
AATGGAACCCGGAATTTACCCCCAACGCAAGAGAAAACCTTGAAAGGATT
GGTTTGTGACAAAAATTTTTAACACAAAACCCTGATTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_g22.b1 MSMg01no535_g22.b1 CHROMAT_FILE:
MSMg01no535_g22.b1 PHD_FILE: MSMg01no535_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:15 2005
         (512 letters)



>mm_chr16_60068406_60069317
          Length = 912

 Score =  965 bits (499), Expect = 0.0
 Identities = 504/506 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttaggagctcagaagtacaagatcaattccctctgaagtgatcaaagcagtct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gaattctttaggagctcagaagtacaagatcaattccctctgaagtgatcaaagcagtct 651

                                                                       
Query: 65  taagctgatctcttctatctaaagggggaaaatggtaattgctgctattttatttcgtgt 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 taagctggtctcttctatctaaagggggaaaatggtaattgctgctattttatttcgtgt 591

                                                                       
Query: 125 atgaatggaagtctcttaaatgcgaactcttctaaaaagcccgaggacacatccacgggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 atgaatggaagtctcttaaatgcgaactcttctaaaaagcccgaggacacatccacgggt 531

                                                                       
Query: 185 tgttttctactgccgaaagatgactctaattttcttgtctgtttgtgcaccttaggggtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgttttctactgccgaaagatgactctaattttcttgtctgtttgtgcaccttaggggtg 471

                                                                       
Query: 245 ccgtgggaaaggattttttatttcttgatatacccaggaagcgaatccatagcacttaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ccgtgggaaaggattttttatttcttgatatacccaggaagcgaatccatagcacttaca 411

                                                                       
Query: 305 agtctaattttcataaagcttcttctcttaaaatacaaagtccatttttttagctagctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agtctaattttcataaagcttcttctcttaaaatacaaagtccatttttttagctagctt 351

                                                                       
Query: 365 ttgctgcaatttcatattattatataaattgaagaatgtcagtacagagccagactaaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttgctgcaatttcatattattatataaattgaagaatgtcagtacagagccagactaaca 291

                                                                       
Query: 425 gctgatgactcctctgtgagccacatgcatgtggataccatttacaaatgcacttgtttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gctgatgactcctctgtgagccacatgcatgtggataccatttacaaatgcacttgtttt 231

                                     
Query: 485 taagaaatgccanggtgaggaggtgg 510
           |||||||||||| |||||||||||||
Sbjct: 230 taagaaatgccagggtgaggaggtgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no535_g22.g1 MSMg01no535_g22.g1 CHROMAT_FILE:
MSMg01no535_g22.g1 PHD_FILE: MSMg01no535_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:15 2005
         (424 letters)



>mm_chr16_59983073_59983896
          Length = 824

 Score =  752 bits (389), Expect = 0.0
 Identities = 415/424 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacttcatgaacaatgagactatgtcttatgttgccttattgagtgtaccagtctgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agacttcatgaacaatgagactatgtcttatgttgccttattgagtgtacccgtctgtct 260

                                                                       
Query: 61  tcaccagttataatatgcaaccaagttcctcatagacaagccagtgacactgtgtgacac 120
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct: 261 ccaccagttataatatgcaaccaagttgctcatagacaagccagtgacactgtgtgacag 320

                                                                       
Query: 121 tagtgtcttcttttgctttgctagcacatctccattacctccctaccacctatattcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtgtcttcttttgctttgctagcacatctccattacctccctaccacctatattcata 380

                                                                       
Query: 181 aaatcttccagataacttaatttccaagatttctgcaacaatttcattgcaggcttgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatcttccagataacttaatttccaagatttctgcaacaatttcattgcaggcttgaca 440

                                                                       
Query: 241 tgaggtggctttgctgtacttttctctggagtgtctggtaaaaaggccataattcactgt 300
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 tgaggtggcttagctgtacttttctctggagtgtctggtaaaaaggccataattcagtgt 500

                                                                       
Query: 301 gtcttgaaattccaaagactaaatatgaactgtcaaggagagatatgcaggtttgcatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcttgaaattccaaagactaaatatgaactgtcaaggagagatatgcaggtttgcatga 560

                                                                       
Query: 361 ttgcagaaagcaagcatgagttagaatttaaattgataattcctaangttcccgtatttt 420
           | ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 tggcagagagcaagcatgagttagaatttaaattgataattcctaaggttcccgtatttt 620

               
Query: 421 cagt 424
           ||||
Sbjct: 621 cagt 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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