BAC Information

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BAC

Clone NameMSMg01-536D02
Chromosome16 (Build37)
Map Location 43,248,954 - 43,422,247
singlet/doubletdoublet
Overlap geneLOC667484
Upstream geneGap43, BC002163
Downstream geneZbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536D02.T7 (MSMg01no536_d02.b1)MSMg01-536D02.TJ (MSMg01no536_d02.g1)
ACCAG603465AG603466
length752733
length of high quality
(start - end)		427 (49 - 475)648 (58 - 705)
definitionCHROMAT_FILE: MSMg01no536_d02.b1 PHD_FILE: MSMg01no536_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:13 2005CHROMAT_FILE: MSMg01no536_d02.g1 PHD_FILE: MSMg01no536_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,248,954 - 43,249,372)(43,421,600 - 43,422,247)
sequence
CTTTTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACATCCTAGGTAAAGCTGACTCCTTCACTACTACTTTTCTT
TATCATCTTCTCTGCCACTGTAGTAATGAGAAGTGTGATGTGAGGAACAT
ACATAATGTTCACATTTTACATATGTAAGGATCAGGACAATTGTACCTTT
TCAAAGAAGAATCTCTATTGATGTAAATATCCCTTAGCACAGAACTATAG
ATGCCAATCTTTTGTTAAAAGCTACTGTTATTTTTTATAACAAAATGATG
AAAATTTATTTATTAAAAGGTTCATTGTCATTATCATGGAGGGTGCGTGG
TTGGTACCTTAACAGTTTGATTGAATTAAAATCAAGTTCAAGCTGGGGTT
TCTTTTGCAGCTCTATTCCTTGCTTTCTCTTTGACTCCAAGCTAATTGCA
CAACCTCTGGTTGACTTGTGCCTCGTCTACACATTCAAAGTAAAAATCAG
AAATGAGGTTATTATCTCACTAATGTAGGCTGGAACATTATTTCTCTAAA
TATTTCTGGAACTGCATTTAAGATTTCTGGTCATAAAAAATCCAGAGTCT
TTAAAACATTCTCCTGTAGCCTTATACATCTGCCCTATGGTAGAACATAC
GGAAGGTCACACACTGATCGGAATTCATGCAGTAATCAAACTGGTTTTGA
TGTTCCCTTCCTACCTACACTAAGCTTCCTATTCTGAATCTAGATACAAA
CT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTATTAGATATATATTCTTTTCCGTCTTTGGTATACAATAAA
ACCATGTATAAGGTTTACAATAAAGAAAATGTTCCATCACTGAATGGAAA
ATACTTTAAATCCTTACTACATTTTTCATTTTTATTTTTTATGTTGGTTT
TGTTGTTTGTAATTCATAGGCCACGGACACAGAATTGCTTTCATTACTGA
CAGATGTGCTTCTCAATATGACTGAAAATCAAGTAATTTCTCTTAGTGTA
CTTGCATATCTTTTTTCTTAAGCAGCATTTATGCATTTGGATGAAGCCAA
TAAATAGGATGCCTTTGGGTTACAGTGCATTAGTGTCTACGTAGTTCTAC
CTTAATCAGAGACCTCAGTGTCTCCTGGAAGGGGTGCATGTGTGCACGCA
TATTCTATGCTTCACTCAGATTCGGACCTTAGAGACATGGTATTTGATTG
CTATATTTTGGATTCTTTTGTGTTTAGGAGAGAAGAGAGGAAACACACCC
ATTCTGCACAAATACCATGCACAACTCAATGGCAAGGTCCCTCTTGGTGT
TCAGTTGAGGTGAAATGAAAATGTGTATGGACCAACTCAAAACTAATCTC
TCATAGCATCTCATTGTAGGCACATTGCTTCTGTCCTAAGAAGAGCGAGC
CAGGAGATCATTTAATCTTAGAAATAAGTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_d02.b1 MSMg01no536_d02.b1 CHROMAT_FILE:
MSMg01no536_d02.b1 PHD_FILE: MSMg01no536_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:13 2005
         (427 letters)



>mm_chr16_43248746_43249572
          Length = 827

 Score =  795 bits (411), Expect = 0.0
 Identities = 417/419 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   tctacatcctaggtaaagctgactccttcactactacttttctttatcatcttctctgcc 68
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tctacatccaaggtaaagctgactccttcactactacttttctttatcatcttctctgcc 268

                                                                       
Query: 69  actgtagtaatgagaagtgtgatgtgaggaacatacataatgttcacattttacatatgt 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 actgtagtaatgagaagtgtgatgtgaggaacatacataatgttcacattttacatatgt 328

                                                                       
Query: 129 aaggatcaggacaattgtaccttttcaaagaagaatctctattgatgtaaatatccctta 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaggatcaggacaattgtaccttttcaaagaagaatctctattgatgtaaatatccctta 388

                                                                       
Query: 189 gcacagaactatagatgccaatcttttgttaaaagctactgttattttttataacaaaat 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gcacagaactatagatgccaatcttttgttaaaagctactgttattttttataacaaaat 448

                                                                       
Query: 249 gatgaaaatttatttattaaaaggttcattgtcattatcatggagggtgcgtggttggta 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gatgaaaatttatttattaaaaggttcattgtcattatcatggagggtgcgtggttggta 508

                                                                       
Query: 309 ccttaacagtttgattgaattaaaatcaagttcaagctggggtttcttttgcagctctat 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ccttaacagtttgattgaattaaaatcaagttcaagctggggtttcttttgcagctctat 568

                                                                      
Query: 369 tccttgctttctctttgactccaagctaattgcacaacctctggttgacttgtgcctcg 427
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 569 tccttgctttctctttgactccaagctaattgcataacctctggttgacttgtgcctcg 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no536_d02.g1 MSMg01no536_d02.g1 CHROMAT_FILE:
MSMg01no536_d02.g1 PHD_FILE: MSMg01no536_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:13 2005
         (648 letters)



>mm_chr16_43421400_43422447
          Length = 1048

 Score = 1214 bits (628), Expect = 0.0
 Identities = 643/648 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttattagatatatattcttttccgtctttggtatacaataaaaccatgtataaggttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 tttattagatatatattcttttccgtctttggtatacaataaaaccatgtataaggttta 789

                                                                       
Query: 61  caataaagaaaatgttccatcactgaatggaaaatactttaaatccttactacatttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 caataaagaaaatgttccatcactgaatggaaaatactttaaatccttactacatttttc 729

                                                                       
Query: 121 atttttattttttatgttggttttgttgtttgtaattcataggccacggacacagaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 atttttattttttatgttggttttgttgtttgtaattcataggccacggacacagaattg 669

                                                                       
Query: 181 ctttcattactgacagatgtgcttctcaatatgactgaaaatcaagtaatttctcttagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ctttcattactgacagatgtgcttctcaatatgactgaaaatcaagtaatttctcttagt 609

                                                                       
Query: 241 gtacttgcatatcttttttcttaagcagcatttatgcatttggatgaagccaataaatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 608 gtacttgcatatcttttttcttaagcagcatttatgcatttggatgaagccaataaataa 549

                                                                       
Query: 301 gatgcctttgggttacagtgcattagtgtctacgtagttctaccttaatcagagacctca 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 548 gatgcctttgggttacagtgcattagtgtctatgtagttctaccttaatcagagacctca 489

                                                                       
Query: 361 gtgtctcctggaaggggtgcatgtgtgcacgcatattctatgcttcactcagattcggac 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 488 gtgtctcctggaaggggtgcatgtgcgcacgcatattctatgcttcactcagattcggac 429

                                                                       
Query: 421 cttagagacatggtatttgattgctatattttggattcttttgtgtttaggagagaagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cttagagacatggtatttgattgctatattttggattcttttgtgtttaggagagaagag 369

                                                                       
Query: 481 aggaaacacacccattctgcacaaataccatgcacaactcaatggcaaggtccctcttgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aggaaacacacccattctgcacaaataccatgcacaactcaatggcaaggtccctcttgg 309

                                                                       
Query: 541 tgttcagttgaggtgaaatgaaaatgtgtatggaccaactcaaaactaatctctcatagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgttcagttgaggtgaaatgaaaatgtgtatggaccaactcaaaactaatctctcatagc 249

                                                           
Query: 601 atctcattgtaggcacattgcttctgtcctaagaagagcgagccagga 648
           ||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 248 atctcattgtaggtacattgcttctgtccaaagaagagcgagccagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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