Query= MSMg01no536_h03.b1 MSMg01no536_h03.b1 CHROMAT_FILE:
MSMg01no536_h03.b1 PHD_FILE: MSMg01no536_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:33 2005
(423 letters)
>mm_chr16_43382417_43383239
Length = 823
Score = 721 bits (373), Expect = 0.0
Identities = 399/419 (95%), Gaps = 18/419 (4%)
Strand = Plus / Plus
Query: 5 gaattcccagagtgtacagggaagagtatgtggagggatcatgggtcaagttcttctttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccagagtgtacagggaagagtatgtggagggatcatgggtcaagttcttctttt 264
Query: 65 agaatgtatgagagtgattttgcgctaatgaccccaggataactcataaaagtgtatctt 124
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 agaatgtatgagagtgattttgcgctaataaccccaggataactcataaaagtgtatctt 324
Query: 125 actctctctctctctctctctctctctctctctctctctctctctctctctccctctcaa 184
| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 a------------------ctctctctctctctctctctctctctctctctccctctcaa 366
Query: 185 ccccccccccatataatagaattgaatatagtttcccacaataactctaaagataataaa 244
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 367 ccccccccccatataatagaattgaatacagtttcccacaataactctaaagataataaa 426
Query: 245 gtggagcaaaggctatgttaggacctcgtgcaatgttaggacctcgtttgcacaaggccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtggagcaaaggctatgttaggacctcgtgcaatgttaggacctcgtttgcacaaggccc 486
Query: 305 tgggttagatgcctagtaccacctgcaatatcaaaactatgatataaaaacaggaagact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgggttagatgcctagtaccacctgcaatatcaaaactatgatataaaaacaggaagact 546
Query: 365 aagtgtttaaggtcatccttgactacatagtgagttggagccagtgtgggctacctgag 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aagtgtttaaggtcatccttgactacatagtgagttggagccagtgtgggctacctgag 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_h03.g1 MSMg01no536_h03.g1 CHROMAT_FILE:
MSMg01no536_h03.g1 PHD_FILE: MSMg01no536_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:33 2005
(506 letters)
>mm_chr16_43562790_43563695
Length = 906
Score = 955 bits (494), Expect = 0.0
Identities = 503/506 (99%)
Strand = Plus / Minus
Query: 1 aaagagaactcaaaggagtaagactaagagaagggaaagaaaattctagaactgtctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 aaagagaactcaaaggagtaagactaagagaagggaaagaaaattctagaactgtctggg 795
Query: 61 tgaccttaggcaaatcatctggcttctcagtgaccaccttttccatttgtaaaaagaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tgaccttaggcaaatcatctggcttctcagtgaccaccttttccatttgtaaaaagaagg 735
Query: 121 gatgagttttatgattttaaggtcccttaaaattgtagcagcctcctgagaagaaaactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gatgagttttatgattttaaggtcccttaaaattgtagcagcctcctgagaagaaaactg 675
Query: 181 tgggaattacagagctcatcaacctgggaagccactaaccatgttaaagaaatctatttg 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 674 tgggaattacagagctcatcaacctaggaagccactaaccatgttaaagaaatctatttg 615
Query: 241 acttttacctttttaactaattacctgaaaccaattccctagtcgatatcactaatccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 acttttacctttttaactaattacctgaaaccaattccctagtcgatatcactaatccca 555
Query: 301 gctgatgaagactggcgagaaaccattaaaacaagtaaggcatgagaggcagcatggcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gctgatgaagactggcgagaaaccattaaaacaagtaaggcatgagaggcagcatggcca 495
Query: 361 gacaggctgatcagggacgtggcttcagcttctccatgctgggagaactgctcccagttt 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 494 gacaggctgatcagggacgtggcttcagcttctctatgctgggagaactgctcccagttt 435
Query: 421 taaaatgtagcttgttaattaaccaccagctaatactcatgtccaggagaaatacctccg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 434 taaaatgtagcttgttaattaaccaccagctaatactcatgtccaggagaaatacccccg 375
Query: 481 atggctcaaagacccctgggatggtc 506
||||||||||||||||||||||||||
Sbjct: 374 atggctcaaagacccctgggatggtc 349
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
