Query= MSMg01no536_k12.b1 MSMg01no536_k12.b1 CHROMAT_FILE:
MSMg01no536_k12.b1 PHD_FILE: MSMg01no536_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:49 2005
(507 letters)
>mm_chr16_77948347_77949253
Length = 907
Score = 857 bits (443), Expect = 0.0
Identities = 490/509 (96%), Gaps = 6/509 (1%)
Strand = Plus / Plus
Query: 5 gaattctctttaaatacatttttggatactcatactaaacactatgaattatgtgttctg 64
|||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||
Sbjct: 205 gaattctctttaaatacatttttggacactcatattaaacaccatgaattatgtgttctg 264
Query: 65 tctcctataattttatgaacaataattctcaaaaataaggccactttaaaaggaatacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctcctataattttatgaacaataattctcaaaaataaggccactttaaaaggaatacat 324
Query: 125 ttaatacatcccacaatggtacatgtgtgtgttctactgaaaaagtatcttttattcagc 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaaaacatcccacaatggtacatgtgtgtgttctactgaaaaagtatcttttattcagc 384
Query: 185 agatataactgtcctctcagaaacttactgctgaataaactcactttctggactctggct 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 agatataactgtcctctcagaaacttactgctgaataaactcactttctgaactctggct 444
Query: 245 gcctgattcaaccaactgtctagcccaaactcctctaccatctgtctgaatcaaactggc 304
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 445 gcctgattcaaccaactgtctagcccaaactcctctacaatctgactgaatcaaactggc 504
Query: 305 ttcccctgtattcgaacttaattgctgtgcttggcctcaaataattaactctgacactct 364
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 505 ttcccctgtattctaacttaattgctgtgcttggcctcaaatagttaactctgacaatct 564
Query: 365 gtcctaatcttctggctccttcttattctctggctgatttcgtcttcacctgtaaaatta 424
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 565 gtcctaatcttctggccccttcttattctctggctgattttgtcttcacctgtaaaatta 624
Query: 425 cctgagtcaaaactctccctttctctct------ctctctctctctctctctctctctct 478
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 625 cctgagtcaaaactctccctttctttctttagcgctctctctctctctctctctctctct 684
Query: 479 ctctctctctctctctctctctctctctc 507
|||||||||||||||||||||||||||||
Sbjct: 685 ctctctctctctctctctctctctctctc 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_k12.g1 MSMg01no536_k12.g1 CHROMAT_FILE:
MSMg01no536_k12.g1 PHD_FILE: MSMg01no536_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:50 2005
(535 letters)
>mm_chr16_77974656_77975590
Length = 935
Score = 1011 bits (523), Expect = 0.0
Identities = 532/535 (99%)
Strand = Plus / Minus
Query: 1 actaactaccttttaaagttctatttaagttattgattctgtgaaatttttattcattaa 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 735 actaactaccttttaaagttccatttaagttattgattctgtgaaatttttattcattaa 676
Query: 61 tttaacctttaatataaaaattacattaaactaggaaaatgaaacatttgtatttatagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tttaacctttaatataaaaattacattaaactaggaaaatgaaacatttgtatttatagt 616
Query: 121 taccttgtgatattctctgagtacaatactaattaatctccattactgctgtgtcaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 taccttgtgatattctctgagtacaatactaattaatctccattactgctgtgtcaaggg 556
Query: 181 cacaaaagtgacacttgtagccactaaaaaatagtggtaaagactcaggctgaactttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cacaaaagtgacacttgtagccactaaaaaatagtggtaaagactcaggctgaactttag 496
Query: 241 agaatttgccaatggtcttttgattagctcattctacataatattggagtataatgccta 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 495 agaatttgccaatggtcttttgattagcccattctacataatattggagtataatgccta 436
Query: 301 tggtatacttgggaccaagactatttttcataatttatctgaagctctactctaaatgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tggtatacttgggaccaagactatttttcataatttatctgaagctctactctaaatgga 376
Query: 361 tattctatttttttctggaaactctacctttgcaataatttagacttaaataatgtagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tattctatttttttctggaaactctacctttgcaataatttagacttaaataatgtagtt 316
Query: 421 gataatttaatggcaattgtatttttaatttccaaaggattgtatttttatttttatatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gataatttaatggcaattgtatttttaatttccaaaggattgtatttttatttttatatc 256
Query: 481 tcaagcagtctctttatttagccagcactttcttgatttaattgacataatcagt 535
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tctagcagtctctttatttagccagcactttcttgatttaattgacataatcagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
