BAC Information

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BAC

Clone NameMSMg01-537F09
Chromosome16 (Build37)
Map Location 20,091,950 - 20,092,507
singlet/doubletsinglet
Overlap genenone
Upstream geneIgl, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6
Downstream geneLOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537F09.T7 (MSMg01no537_f09.b1)MSMg01-537F09.TJ (MSMg01no537_f09.g1)
ACCAG604332AG604333
length742750
length of high quality
(start - end)
562 (52 - 613)550 (81 - 630)
definitionCHROMAT_FILE: MSMg01no537_f09.b1 PHD_FILE: MSMg01no537_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:41 2005CHROMAT_FILE: MSMg01no537_f09.g1 PHD_FILE: MSMg01no537_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTATATATCCCGGACTGGCATTGAACCTGTAGCAGTTC
TCCTGTCTCATCTTCTCAAGTGCTGGAGTTATAGACATGAGCCACTTTGA
CTGGCTTTTAAAATATTCTTCATTTATTTTATTGTTTCTTGTTTTGTCAG
GCTGATCTTAAAACTCATAGCAATCATTCTCCCTCAGTCTCCCACGTGCT
GGTTTTGTAGACATGTCCCCACCTTCATGTACCCAGGCCTCAGCAGATCC
TCTGTAGACTTGTTATTGTATGTTATACATTCTTTCTTGCACAAAGGATA
TCATAGAGAAGACGGTTTACTCTTTCTGATGGGGAGATATAATTTATCTT
AAAACTACACTGTATTTAGAAATATTGAGAAAGATCATAAATGGCTGGAA
GAACGGTAATTTGATATGCTAGTATCATGGAAATAGGCTTTACAATAACC
CTTCTGAAAACTATAAATTAAAATGTTTTGGGAAACTACAATGAAACAAT
AAATGACTGATTTGTAGATATTGTTATACGAAAGCCAACTTAATAAAAAA
CAAAACAAACAAACTAACCCAAAATAGCCCTCTGAACACCCAATCAAAGT
GCTGTCCTCTAAAGGTGTATGAAAGCGTGTCTCTGCCCCTATATCTTCAC
ACAAAGGTGACATGATTATTTAAAAACTGGTTGACTCTTGAC
NTCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAGCAGCTTGACAACACA
CCTAAAAACTCTAGAACAAAAGGAAGCAAATTCACCCAAGAGGAGTAGAC
AGCAGGAAATAATCAAACTCACGGGTGAAATCAACCAAGTGGAAACAAGA
AGAGCTATTCAAAGAATCAACCAAAGGAGGAGCTAGTTCTTTGAGAAAAT
CAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGGCACAGGGACA
GCATCCTAATTAACAAAATCAGAGATGAAAAGGGAGACATAACAACAGAT
CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTC
AACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACC
AGGTACCAAAGTTAAATCAGGATCAGGTTAATGATGTAAACAGTCCTATA
TCCCCTAAAGAAATAGAACCAGTCATTAATAGTCTCCCAACCAATGAAAG
CCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAG
ATCTAATTCCTGTTCTTCACAAACTATTCCACAAAATAGAAGCAGAAAGT
ACTCTACCCAATTCATTCTATAAAGCTACAATTATTCTGATACCCAAACC
ACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTTCCTTATGA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_f09.b1 MSMg01no537_f09.b1 CHROMAT_FILE:
MSMg01no537_f09.b1 PHD_FILE: MSMg01no537_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:41 2005
         (562 letters)



>mm_chr16_20091645_20092606
          Length = 962

 Score = 1009 bits (522), Expect = 0.0
 Identities = 549/558 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactatatatcccggactggcattgaacctgtagcagttctcctgtctcatcttc 64
           |||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 863 gaattcactataaatcccgggctggcattgaacttgtagcagttctcctgtctcatcttc 804

                                                                       
Query: 65  tcaagtgctggagttatagacatgagccactttgactggcttttaaaatattcttcattt 124
           |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 803 tcaagtgctggaattatagacatgagccaccttgactggcttttaaaatattcttcattt 744

                                                                       
Query: 125 attttattgtttcttgttttgtcaggctgatcttaaaactcatagcaatcattctccctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 attttattgtttcttgttttgtcaggctgatcttaaaactcatagcaatcattctccctc 684

                                                                       
Query: 185 agtctcccacgtgctggttttgtagacatgtccccaccttcatgtacccaggcctcagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agtctcccacgtgctggttttgtagacatgtccccaccttcatgtacccaggcctcagca 624

                                                                       
Query: 245 gatcctctgtagacttgttattgtatgttatacattctttcttgcacaaaggatatcata 304
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 623 gatcctctgtagacttgttatcgtatgttatacattctttctcgcacaaaggatatcata 564

                                                                       
Query: 305 gagaagacggtttactctttctgatggggagatataatttatcttaaaactacactgtat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gagaagacggtttactctttctgatggggagatataatttatcttaaaactacactgtat 504

                                                                       
Query: 365 ttagaaatattgagaaagatcataaatggctggaagaacggtaatttgatatgctagtat 424
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 503 ttagaaatattgagaaagatcataaatggctggaagaatggtaatttgatatgctagtat 444

                                                                       
Query: 425 catggaaataggctttacaataacccttctgaaaactataaattaaaatgttttgggaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 catggaaataggctttacaataacccttctgaaaactataaattaaaatgttttgggaaa 384

                                                                       
Query: 485 ctacaatgaaacaataaatgactgatttgtagatattgttatacgaaagccaacttaata 544
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 383 ctacaatgaaacaataaatgactgatttgtagatattgttatactaaagccaacttaata 324

                             
Query: 545 aaaaacaaaacaaacaaa 562
           ||||||||||||||||||
Sbjct: 323 aaaaacaaaacaaacaaa 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)