BAC Information

Click to search

BAC

Clone NameMSMg01-537P19
Chromosome16 (Build37)
Map Location 89,018,918 - 89,019,588
singlet/doubletsinglet
Overlap genenone
Upstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201
Downstream geneKrtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537P19.T7 (MSMg01no537_p19.b1)MSMg01-537P19.TJ (MSMg01no537_p19.g1)
ACCAG604826AG604827
length737732
length of high quality
(start - end)		674 (53 - 726)651 (82 - 732)
definitionCHROMAT_FILE: MSMg01no537_p19.b1 PHD_FILE: MSMg01no537_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:31 2005CHROMAT_FILE: MSMg01no537_p19.g1 PHD_FILE: MSMg01no537_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGGAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGATATTATGATCACTTATGTGTTATAGAACTCATC
TTCTTAGATAATTTTATTAATATTTTTACCAACTTTCAGAATATCTATTT
CATGTGTTTGTAGCATAATGAGACTTACGTTATTTATGAGCATAATCAGA
ATCTTTTCCTGTTGTCTGATTAAGTCCATTAGGATATAGGATCTGGTTGA
CGTACTTCATGTCTGAGCTTCATGCCTATTGCTATAATGATGTACCCTGG
CAAGAATCAGCTTAGAGGAGAAAAGGTTTGCTTGAACTCACAGTACCAGG
TTATGGTCTATCACAGTATGGAAGTCAAGGAAGCAGGGACAGGAAGCAGC
TTCTTATATCACTTCTGTAGTCAAAAGCAAAGAAAAATAAATGCATGTGT
GCCTGCTATTCAGTTCAATTTCTCTGCTTGGATACAGGCCAGAATCCAAA
TCCAGATGCTGCTGCAGGCCACAATGGACAGACCTTCCATCATAGTAATT
GCAATCCATTAATTAACTGAGCAACATTTTAGTTGTCACATAGAACTTAT
GCATACCCATGCAATACCTTGAGATGCTTTGATAGATGATTGTTCTATAC
AACCCTCAAACCAGGCTGTGCTTATCTATTCCAATATTTTTTATGAATCA
TTCAAAATACTTTCTGTTACTCTTTGGAAAGAATAGN

TTTTCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTTTAATCTTCTCAGCT
CCTCTAAATATCTGAGTCCCTTCTCTTCCTTTACTCTCTGGAGCACACTT
AGCTGCAGCTTGTCTTCTGTGCGTGGGCAGGCTGCACTACACTGCTCCTG
CTGCTCTTCTTGCTTGTCCCATGGTAATGTATTCCATGCCTTTCCCTCCC
AAAAATTTTGTATCCAGAGATGGGTATTAATGTAACAGACCTAAGCATGG
AGCATGTTTATAGACTTTGGATTTGCAAAACAGGCGAATGCTTTAAAAGA
CCCTCATTAGGCTGCTTTAACAGGAGTGTGGAAGATAGTGGTGCCAAGAA
CAATGTGGATTATGACTGCCTAGTTCAAGAGTTTTCAGAGGAGAAGAATA
TAATTAAATGAGCTAGAGACTGTTCTTGTAATATTTTGGCAAATGATATA
TCTGCCTTTTCTGAAAAATCTACCTAAGACTAGATGAAATATAACACTAT
TGGATTAGTGGTGTTGGCTTTGAAGTTTCAATAGTCCATGCGAAACCTAC
AGTGTCCCTTCTCCTGCTGCCTGCAGATCCAGATTTAGAATTTTCGGCTA
CTTCTCCATCACAATGACTACCTGCATGCCATCATGTTTCTGTTCATGAT
GAAAAAGGCCTACACCTAGGAACTACACACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_p19.b1 MSMg01no537_p19.b1 CHROMAT_FILE:
MSMg01no537_p19.b1 PHD_FILE: MSMg01no537_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:31 2005
         (674 letters)



>mm_chr16_89018715_89019788
          Length = 1074

 Score = 1274 bits (659), Expect = 0.0
 Identities = 668/671 (99%), Gaps = 1/671 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgatattatgatcacttatgtgttatagaactcatcttcttagataatttta 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttgatattaggatcacttatgtgttatagaactcatcttcttagataatttta 263

                                                                       
Query: 65  ttaatatttttaccaactttcagaatatctatttcatgtgtttgtagcataatgagactt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaatatttttaccaactttcagaatatctatttcatgtgtttgtagcataatgagactt 323

                                                                       
Query: 125 acgttatttatgagcataatcagaatcttttcctgttgtctgattaagtccattaggata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acgttatttatgagcataatcagaatcttttcctgttgtctgattaagtccattaggata 383

                                                                       
Query: 185 tag-gatctggttgacgtacttcatgtctgagcttcatgcctattgctataatgatgtac 243
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagtgatctggttgacgtacttcatgtctgagcttcatgcctattgctataatgatgtac 443

                                                                       
Query: 244 cctggcaagaatcagcttagaggagaaaaggtttgcttgaactcacagtaccaggttatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctggcaagaatcagcttagaggagaaaaggtttgcttgaactcacagtaccaggttatg 503

                                                                       
Query: 304 gtctatcacagtatggaagtcaaggaagcagggacaggaagcagcttcttatatcacttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtctatcacagtatggaagtcaaggaagcagggacaggaagcagcttcttatatcacttc 563

                                                                       
Query: 364 tgtagtcaaaagcaaagaaaaataaatgcatgtgtgcctgctattcagttcaatttctct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtagtcaaaagcaaagaaaaataaatgcatgtgtgcctgctattcagttcaatttctct 623

                                                                       
Query: 424 gcttggatacaggccagaatccaaatccagatgctgctgcaggccacaatggacagacct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcttggatacaggccagaatccaaatccagatgctgctgcaggccacaatggacagacct 683

                                                                       
Query: 484 tccatcatagtaattgcaatccattaattaactgagcaacattttagttgtcacatagaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tccatcatagtaattgcaatccattaattaactgagcaacattttagttgtcacatagaa 743

                                                                       
Query: 544 cttatgcatacccatgcaataccttgagatgctttgatagatgattgttctatacaaccc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cttatgcatacccatgcaataccttgagatgctttgatagatgattgttctatacaaccc 803

                                                                       
Query: 604 tcaaaccaggctgtgcttatctattccaatattttttatgaatcattcaaaatactttct 663
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 804 tcaaaccaggctgtgcttatctattccaatagtttttatgaatcattcaaaatactttct 863

                      
Query: 664 gttactctttg 674
           |||||||||||
Sbjct: 864 gttactctttg 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |