BAC Information

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BAC

Clone NameMSMg01-538B14
Chromosome16 (Build37)
Map Location 52,696,677 - 52,697,111
singlet/doubletsinglet
Overlap genenone
Upstream geneCblb, Alcam
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538B14.T7 (MSMg01no538_b14.b1)MSMg01-538B14.TJ (MSMg01no538_b14.g1)
ACCAG604910AG604911
length746744
length of high quality
(start - end)
344 (36 - 379)472 (65 - 536)
definitionCHROMAT_FILE: MSMg01no538_b14.b1 PHD_FILE: MSMg01no538_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:40 2005CHROMAT_FILE: MSMg01no538_b14.g1 PHD_FILE: MSMg01no538_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAGTGTTAAACATTCT
TAATTATCAGGGAAATGCAAATCAAAACAACCTTGAGATTCCACCTCACA
CCAGTCAGAATGGTTAAGACCAAAAATTCAGGTGACAGCAGATGCTGGCA
AGGATGTGGAGGAAGAGGAACACTTCTCCACTGTTGGTGGGATTGCAAGC
TTGTACAACCACTCTGGAAATCAGTCTGTCGGTTCCTCAGAAAATTGGAC
ATCCCTGGATATGGCAGTCTCTACATGGACCATCCTTTTATCTCAGCTCC
AAACTTTGACTTTGCAACTCCTTCCATGGGCGGTTTGTTCCCAATTCTAA
CGAGGGGCATAGAGTCCACACTTCAGTCTTCATTCTTCTTGAGTTTCATG
TGTTTAGCCAATTGTATCTTATATCTGGGGTATCCTAGGTTGCAAAGAAC
CCACATGCCCCTCGACAGAGGAATGGATACCGATAATGCGGTACATCTAC
ACAATGGAGTACCACTCATCTATTAAAAACAATGAATTTCATGAATTCCT
AGGCCAAAGGATGGATGGCGTCATCCTTGAGTGAAGTTACACATTCTCCA
AGGCACTCACTGCATAGGTGCTCGTTCAAAACCCTGAATCATTTGCTATG
CTCACCTGAATTTATCCAAAGGATTCAGATGTAGTTGTCACTTGTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGTAATATTAATAATTTTTAGTTCCTGAGGGGGTTT
TTATATTTGTTATTATTATTATTTGGTTTTTCAAGACAGGGTTTATCTGT
ATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAA
CTCAGAAATCTGCCTGCCTCTGCCTCCGGAGTGCTGGGATTAAAGGCGTG
TGCCACCACACCCGTCTATTATTATTATTATTATTATCATTATTATTATT
AAAAACTAGAAGGTATATTGACAACTTAATGTGTAATTAAACCCTTACAC
ACAAAGTATAACTTTGTAGTTTCTATTAGGCATCCTAATTATAAGCATTT
AAGCATAAATAAAAACCTATAAATTGATTTATATAGTTTTTTAACATAAT
AGGGCCTAGGTTTAAGATTTGGAAATAGGTATAGAACAGAGTGAAGTCTT
TATAAAAATTATATTTGGAAAATACTTCTTTCAGACGAATACTGACAAAT
CATTGGCAGTGTTCTTTCTTGAATTTAACTCTCTATGTGGTAAATTTATA
GATCAAAATCCATTAAAGTCCATCTTCAGTTGTCTCCTAGAGTCTCAGCA
CATTCTTAAGAGAAAAATATACTATTAGCCTTACATAAGGAATAGCTGTN
GTTATTAAACCACATGATTAATTGGTCTTTTAAATGCATGAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_b14.g1 MSMg01no538_b14.g1 CHROMAT_FILE:
MSMg01no538_b14.g1 PHD_FILE: MSMg01no538_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:40 2005
         (472 letters)



>mm_chr16_52696240_52697111
          Length = 872

 Score =  808 bits (418), Expect = 0.0
 Identities = 432/438 (98%), Gaps = 3/438 (0%)
 Strand = Plus / Minus

                                                                       
Query: 35  ttttatatttgttattattattatttggtttttcaagacagggtttatctgtatagccct 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 ttttatatttgttattattattatttggtttttcaagacagggtttatctgtatagccct 813

                                                                       
Query: 95  ggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatctgcctgcc 154
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ggatgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatctgcctgcc 753

                                                                       
Query: 155 tctgcctccggagtgctgggattaaaggcgtgtgccaccacacccgtctattattattat 214
           ||||||||| ||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 752 tctgcctcccgagtgctgggattaaaggcgtgtgccaccacacccgtc---tattattat 696

                                                                       
Query: 215 tattattatcattattattattaaaaactagaaggtatattgacaacttaatgtgtaatt 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tattattatcattattattattaaaaactagaaggtatattgacaacttaatgtgtaatt 636

                                                                       
Query: 275 aaacccttacacacaaagtataactttgtagtttctattaggcatcctaattataagcat 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaacccttacacacaaagtataactttgtagtttctattaggcatcctaattataagcat 576

                                                                       
Query: 335 ttaagcataaataaaaacctataaattgatttatatagttttttaacataatagggccta 394
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 575 ttaagcataaataaaaacctataaattgatttatatagttttttaacataatagtgccta 516

                                                                       
Query: 395 ggtttaagatttggaaataggtatagaacagagtgaagtctttataaaaattatatttgg 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggtttaagatttggaaataggtatagaacagagtgaagtctttataaaaattatatttgg 456

                             
Query: 455 aaaatacttctttcagac 472
           ||||||||||||||||||
Sbjct: 455 aaaatacttctttcagac 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)