BAC Information

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BAC

Clone NameMSMg01-538C23
Chromosome16 (Build37)
Map Location 89,425,924 - 89,589,535
singlet/doubletdoublet
Overlap gene5430433J05Rik
Upstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2
Downstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538C23.T7 (MSMg01no538_c23.b1)MSMg01-538C23.TJ (MSMg01no538_c23.g1)
ACCAG604976AG604977
length747762
length of high quality
(start - end)		627 (37 - 663)602 (66 - 667)
definitionCHROMAT_FILE: MSMg01no538_c23.b1 PHD_FILE: MSMg01no538_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:46 2005CHROMAT_FILE: MSMg01no538_c23.g1 PHD_FILE: MSMg01no538_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,425,924 - 89,426,555)(89,588,938 - 89,589,535)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTC
TTAATTCTCTCATCACTAAATAACCCTCTTGTGTTTTATAGCTCTTAAAT
ACTTGATTGTGAAAAGTGTCTTATGTTTTCATTCGTATTATATAATTCAT
ATAAAATTTAACAGCTGCTTTCCATATTGTGGAGTATCTAGAAGACCTAA
ATTTTTTTTGGAAAAAAAAAAAGTGTATCATTGGGATTTTAGTCCAGTCT
TGAAAATGTTCCTAGTTTTCTTTCCTTGTTGTTTTTTTTTTTTGTCTCAT
ATTTATTTTTTCTTTTTTTTTCCTTTTCCATTTTTTATTAGGTATTTAGC
TCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCC
CAACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGT
AATGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGAT
GGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCC
GGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCC
CTTTAGCTCCTTGGGTACTTTCTATAGCTCCTCCATTGGGAGCCCTGTGA
TCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCC
GGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGAAAAAN

GGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTGGCTGTAAGGGAAACAGCATGGTGAGTGGAATG
GTGTAGAGAAGAGCCTGGACTCCAGTATCTTTCTCTAAAACAGTGCCTTT
AAGAAGAAATGAGTTAGTTAGGTGTGGTGGCTCATATTTAACCTCAGCTC
TGGGGAAGCAGATTCATGCTGATCTCTGTGAGTTCCAAGCCCTGTCTTAA
TAGAAGGAAGAAGAGGAGGAGGACTCATAATTTTGAATTAAAAAAAATGA
CATTTTCCTTAGCATTTTGTTTTTATTTGGTTCATAGTACATGAGAATAT
AAGAAGTCCATTTTTAAACAGTAGCTAGTAAAAACATGTACTGTACCTTC
TGAAGCTAAGAGAAGTTAAAAGCAAAAATGTCAACTTTAAATTAGTCTAT
TTTAATATGAAATCACAAATATTAAGAATTAGAATACACCTAATCAACTA
TTGTGATCACAGATGTAAAATCAGTTGACTGGGTCCTAAGCTGTGATGGA
AGCTGAGGAAGATGCCTGATATTGACCTCTAACCTCTATGTGTTCACCCT
CGTCCTGTTACACACTTGTCATATCAGATGCTGTGACACACTCTCTCTGT
TACACACTTGTCATATCAGATGCTGTGACACACTCTCTCTGTTACACACT
TGTCATATCAGATGCTGTAACACACTCCCTGTTACACACTTGTCATATCA
GATGCTGTGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_c23.b1 MSMg01no538_c23.b1 CHROMAT_FILE:
MSMg01no538_c23.b1 PHD_FILE: MSMg01no538_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:46 2005
         (627 letters)



>mm_chr16_89425721_89426750
          Length = 1030

 Score = 1143 bits (591), Expect = 0.0
 Identities = 619/633 (97%), Gaps = 10/633 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttcttaattctctcatcactaaataaccctcttgtgttttatagctcttaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttcttaattctctcatcactaaataaccctcttgtgttttatagctcttaaa 263

                                                                       
Query: 64  tacttgattgtgaaaagtgtcttatgttttcattcgtattatataattcatataaaattt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacttgattgtgaaaagtgtcttatgttttcattcgtattatataattcatataaaattt 323

                                                                       
Query: 124 aacagctgctttccatattgtggagtatctagaagacctaaattttttttggaaaaaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 324 aacagctgctttccatattgtggagtatctagaagacctaaattttttttgaaaaaaaaa 383

                                                                       
Query: 184 aaa---gtgtatcattgggattttagtccagtcttgaaaatgttcctagttttctttcct 240
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaaaagtgtatcattgggattttagtccagtcttgaaaatgttcctagttttctttcct 443

                                                                       
Query: 241 tgttgtt------ttttttttttgtctcatatttattttttctttttttttccttttcca 294
           |||||||      |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgttgttgtttttttttttttttgtctcatatttattttttctttttttttccttttcca 503

                                                                       
Query: 295 ttttttattaggtatttagctcatttacatttccaatgctataccaaaagtcccccatac 354
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttt-attaggtatttagctcatttacatttccaatgctataccaaaagtcccccatac 562

                                                                       
Query: 355 ccacccaccccaactcccctacccacccactccccctttttggccctggtgttcccctgt 414
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccacccacccccactcccctacccacccactccccctttttggccctggtgttcccctgt 622

                                                                       
Query: 415 aatggggcatataaagtttgcaagtccaatgggcctctctttccagtgatggccgactag 474
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 623 aatggggcatataaaatttgcaagtctaatgggcctctctttccagtgatggccgactag 682

                                                                       
Query: 475 gccatcttttgatacatatgcagctagagtcaagagctccggggtactggttagttcata 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gccatcttttgatacatatgcagctagagtcaagagctccggggtactggttagttcata 742

                                                                       
Query: 535 atgttgttccacctatagggttgcagatccctttagctccttgggtactttctatagctc 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atgttgttccacctatagggttgcagatccctttagctccttgggtactttctatagctc 802

                                            
Query: 595 ctccattgggagccctgtgatccatccattagc 627
           |||||||||||||||||||||||||||||||||
Sbjct: 803 ctccattgggagccctgtgatccatccattagc 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1030
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1020
Effective search space:   629340
Effective search space used:   629340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no538_c23.g1 MSMg01no538_c23.g1 CHROMAT_FILE:
MSMg01no538_c23.g1 PHD_FILE: MSMg01no538_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:47 2005
         (602 letters)



>mm_chr16_89588790_89589787
          Length = 998

 Score =  895 bits (463), Expect = 0.0
 Identities = 566/613 (92%), Gaps = 26/613 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggctgtaagggaaacagcatggtgagtggaatggtgtagagaagagcctggactccag 60
           |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 746 ttggctgtaagggaaatagcatggtgagtggaatgctgtagagaagagcctggactccag 687

                                                                       
Query: 61  tatctttctctaaaacagtgcctttaagaagaaatgagttagttaggtgtggtggctcat 120
           | | ||| ||||||| |||||||||||||||||||||| ||| |||| ||||||||||| 
Sbjct: 686 tgtgtttttctaaaatagtgcctttaagaagaaatgagctagctaggcgtggtggctcac 627

                                                                       
Query: 121 atttaacctcagctctggggaagcagattcatgctgatctctgtgagttccaagccctgt 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 626 atttaacctcagctctggggaagcagattcatgctgatctctgtaagttccaagccctgt 567

                                                                       
Query: 181 cttaatagaagga---agaagaggaggagga------ctcataattttgaattaaaaaaa 231
           |||||||||||||   |||||||||||||||      |||||||||||||||  ||||||
Sbjct: 566 cttaatagaaggaggaagaagaggaggaggaggagggctcataattttgaat--aaaaaa 509

                                                                       
Query: 232 atgacatttt-ccttagcattttgtttttatttggttcatagtacatgagaatataagaa 290
           |||||||||| |||||||||||||||   ||||||||||||||||| |||||||||||| 
Sbjct: 508 atgacatttttccttagcattttgtt---atttggttcatagtacaagagaatataagag 452

                                                                       
Query: 291 gtccatttttaaacagtagctagtaaaaacatgtactgtaccttctgaagctaagagaag 350
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||      
Sbjct: 451 gtccatttttaaacagtagctagtaaaaacatgcactgtaccttctgaagctaa------ 398

                                                                       
Query: 351 ttaaaagcaaaaatgtcaactttaaattagtctattttaatatgaaatcacaaatattaa 410
               ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 397 ----aagcaaaaatgtcaactttaaattagtttattttaatatgaaatcacaaatattaa 342

                                                                       
Query: 411 gaattagaatacacctaa-tcaactattgtgatcacagatgtaaaatcagttgactgggt 469
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 341 gaattagaatacacctaaatcaactattgtgatcacagatataaaatcagttgactgggt 282

                                                                       
Query: 470 cctaagctgtgatggaagctgaggaagatgcctgatattgacctctaacctctatgtgtt 529
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 281 cctaagctgttatggaagctgaggaagatgcctgatattgacctctaacctctacgtgtc 222

                                                                       
Query: 530 caccctcgtcctgttacacacttgtcatatcagatgctgtgacacactctctctgttaca 589
           |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 221 cacccttgtcctgttacacacgtgtcatatcagatgctgtgacacactctctctgttaca 162

                        
Query: 590 cacttgtcatatc 602
           |||||||||||||
Sbjct: 161 cacttgtcatatc 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 7
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 998
Length adjustment: 10
Effective length of query: 592
Effective length of database: 988
Effective search space:   584896
Effective search space used:   584896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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