Query= MSMg01no539_j11.b1 MSMg01no539_j11.b1 CHROMAT_FILE:
MSMg01no539_j11.b1 PHD_FILE: MSMg01no539_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:36 2005
(576 letters)
>mm_chr16_19534855_19535834
Length = 980
Score = 1025 bits (530), Expect = 0.0
Identities = 563/576 (97%), Gaps = 4/576 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaacacatttacattgtttctttagaattttaattttattttgctttcctattt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattcaaacacatttacattgtttctttagaattttaattttattttgctttcctactt 264
Query: 65 tttatgaaaatcctaaaaagagctttcttatgacatgaaaaccatacctccagaatctcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttatgaaaatcctaaaaagagctttcttatgacatgaaaaccatacctccagaatctcc 324
Query: 125 cctagttaatgtagcccaaaccaaatctgcacaataatgtcatttggactcagctcatct 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 cctagttaatgtagcccaaaccaactctgcacaataatgtcatttggactcagctcatct 384
Query: 185 gaggatcttctactcgtacttctatttgtgaggaaaagtacctttacagtgtagccattc 244
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 gaggatcttctacttgtacttctatttgtgaggaaaagtacctttacagggtagccattc 444
Query: 245 cgtgcagataatctgtgagtcttatgaaatcttcagtcccctctttactcacattccctg 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 cgtgcagataatctgtgagtcttaagaaatcttcagtcccctctttactcacattccctg 504
Query: 305 cttggtatgccacaagatcatctttctgtacaacagcaccaactaaagaatagaaatctg 364
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 cttagtatgccacaagatcatctttctgtacaacagcaccaactaaagaatagaaatccg 564
Query: 365 cttcttacactagaatccttccaaactatcaggaaaacactttcaagaattacctacttt 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttcttacactagaatccttccaaactatcaggaaaacactttcaagaattacctacttc 624
Query: 425 tcatcttattcataataaagccaagaaaacatcattaaccactcactgaaatatttacac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcatcttattcataataaagccaagaaaacatcattaaccactcactgaaatatttacac 684
Query: 485 actcattgctcagataaaatatcctctcttacta----ttttttaagtaaaaccaagaga 540
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 685 actcattgctcagataaaatatcctctcttactaactattttttaagtaaaatcaagaga 744
Query: 541 aattttagattcatttcccacagactgtattggtga 576
||||||||||||||||||||||||||||||||||||
Sbjct: 745 aattttagattcatttcccacagactgtattggtga 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 980
Length adjustment: 10
Effective length of query: 566
Effective length of database: 970
Effective search space: 549020
Effective search space used: 549020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_j11.g1 MSMg01no539_j11.g1 CHROMAT_FILE:
MSMg01no539_j11.g1 PHD_FILE: MSMg01no539_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:36 2005
(542 letters)
>mm_chr16_19725111_19726052
Length = 942
Score = 1009 bits (522), Expect = 0.0
Identities = 537/542 (99%)
Strand = Plus / Minus
Query: 1 attgaagattctagtcctcatggccctgcattactgcctgcctctgtcccttctacaaat 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 742 attgaagattctagtcctcatggccctgcattactgcctgcgtctgtcccttctacaaat 683
Query: 61 ctttgggtgatacccaaagccacccagccagtgacacttgccatgttctctaccagggat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctttgggtgatacccaaagtcacccagccagtgacacttgccatgttctctaccagggat 623
Query: 121 cacatagccatactttttgagtatggatctcccctaattctgcagcttccacctgctcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cacatagccatactttttgagtatggatctcccctaattctgcagcttccacctgctcag 563
Query: 181 ctcgacctcccatcctgtctccattcctatggaacttcatagtgacattagccctgtttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctcgacctcccatcctgtctccattcctatggaacttcatagtgacattagccctgtttc 503
Query: 241 tcaccagtgaccctgtagtcactggtagagagaggcatagcagcgtaggcccagatgggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcaccagtgaccctgtagtcactggtagagagaggcatagcagcgtaggcccagatgggc 443
Query: 301 tacctgtgctccctccagctgcccatgtcacattcaacattcagggttttcctggaaccc 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 tacctgtgctccctccagctgcccatgtcacattcaacattcagggtttccctggaaccc 383
Query: 361 acatcctgtgcccacatccagtctagtgaatttcttgaatcctattatacttgtgcccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acatcctgtgcccacatccagtctagtgaatttcttgaatcctattatacttgtgcccca 323
Query: 421 ttctattcagcagacatagcccaagctgcaccaaataaaatatcctatttccgtcttgtc 480
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttagattcagcagacatagcccaagctgcaccaaataaaatatcctatttccgtcttgtc 263
Query: 481 cccctgggagcattttagtgctccatcctgtgagagttcgagagagcaaatgagaagcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cccctgggagcattttagtgctccatcctgtgagagttcgagagagcaaatgagaagcag 203
Query: 541 ag 542
||
Sbjct: 202 ag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
