NCCCCCCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTCAGAAAGTTTTATATGTATGCATATTGCTAT
TATTTGTTTCATTGTTGTTGTTTGAGATAAGATCTCATGGTATAGCTCAG
GATATCCTGGAACTCAGTGTCATCTAGGCTGACCTAGGGGTTAAGATTAG
AGGTTTGTGCCACTATAATAGTGACTTGTGCACACTATTATTATTTTTAA
AACTAGTGCACCTAATTCAAGAGCCACAAAGCCCCTGGTTAAAGTAAATG
TGTCCCCAAGCAAAGCCAAAATCACAAATCTCACAAAGCAGCTGCTAGCA
AAAGGGGGAAGGTAGGTTGTAGAGATGGGTGAGAGGACGGAGGAAAAATA
AAGACTAATCAAAATACATTATATACATGTATAAAGTTGTCAAATTAAAA
TTAATTAATGAAAAATTAGTGCAACCTTAGAATAATCATGCTGTCCTATA
TGTATCCCAATATATGCCACATCATGTAAGTCCTATTATAGTTAAATGAT
ATTTATCTAAGTGGATGGCCGTATTGTGCTGGGTGTGGCAAAAGCTTGAG
CAGTTTCCACTGTCGCAGTTCTCTATATTAGATTTGTAGAAGCCCAGTGA
CCCCATTCTCCTTGGAAATGTTTGTAGATGGTTTCCTTTTCACACAGGTT
TGTTCCTTATTGTGGCAGAAGATGTTGTTN

NTCCATGCTGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACAG
TCTGTTTTACGGGAACCTTTATGACCGTGACCCGCAGTTCTGGTTCCGGA
ATGAGGGATCTTCCTTGCGCCAGTGATGGTAACCGTCCCGTCCCGAGTTT
TCTTGTCCCGGGTTTTTTCGTCCCAGGTCTTCTCGTCCCAGGTCTTCTCG
TCCCAGGTCTTCTCGTCCCAGGTTTTCTCGTCCCAGGTCTTCTCGTCCCA
GGTCTTCTCGTCCCAGGTTTTCTCGTCCCAGGTCTTCTCGTCCCGGGTTT
CGGCACCAACTCTTACACGCGTTCGCGACCGGCCAGGAAAGACGCAGCAA
ACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACATCTTTAGGAGCCA
GAGAGCAAGAGAGCAAGAGCAAGAAAGCAAGAAAAAGAACAAGAGCAAGA
GAAAGAACAAGAACAAGAAAGCAAGAGAAAGAACAAGAAAGCAAGAGAGA
GAAAGCAAGAACAAGAGAGAGAAAAAGCAAGAACAAGAGAGAGAGAAAGC
AAGAACAAGAGAGAGAGAAAGAATGGCAAAACCCCGTCCCTTTTAAGGAG
AATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCAGCCCATC
GGCCCAGTTGTCATCACGAGAAAGGCAGAACACATGGCGGGAAAAC

Query= MSMg01no540_e11.b1 MSMg01no540_e11.b1 CHROMAT_FILE:
MSMg01no540_e11.b1 PHD_FILE: MSMg01no540_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:30 2005
         (638 letters)



>mm_chr16_65071436_65072473
          Length = 1038

 Score = 1079 bits (558), Expect = 0.0
 Identities = 597/610 (97%)
 Strand = Plus / Minus

                                                                       
Query: 24  ttttatatgtatgcatattgctattatttgtttcattgttgttgtttgagataagatctc 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 610 ttttatatgtatgcatattgctattatttgtttcattgttgttgtttgagacaagatatc 551

                                                                       
Query: 84  atggtatagctcaggatatcctggaactcagtgtcatctaggctgacctaggggttaaga 143
           |  ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 550 acagtatagctcaggataacctggaactcagtgtcatttaggctgacctgggggttaaga 491

                                                                       
Query: 144 ttagaggtttgtgccactataatagtgacttgtgcacactattattatttttaaaactag 203
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 490 ttagaggtttgtgccaccataatagtgacttatgcacactattattatttttaaaactag 431

                                                                       
Query: 204 tgcacctaattcaagagccacaaagcccctggttaaagtaaatgtgtccccaagcaaagc 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 430 tgcacctaattcaagagccacaaagcccctggttaaagtaaatgtgtccccaaacaaagc 371

                                                                       
Query: 264 caaaatcacaaatctcacaaagcagctgctagcaaaagggggaaggtaggttgtagagat 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 caaaatcacaaatctcacaaagcagctgctagcaaaagggggaaggtaggttgtagagat 311

                                                                       
Query: 324 gggtgagaggacggaggaaaaataaagactaatcaaaatacattatatacatgtataaag 383
           |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 310 gggtgagaggacgggggaaaaataaagactaatcaaaatatattatatacatgtataaag 251

                                                                       
Query: 384 ttgtcaaattaaaattaattaatgaaaaattagtgcaaccttagaataatcatgctgtcc 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttgtcaaattaaaattaattaatgaaaaattagtgcaaccttagaataatcatgctgtcc 191

                                                                       
Query: 444 tatatgtatcccaatatatgccacatcatgtaagtcctattatagttaaatgatatttat 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tatatgtatcccaatatatgccacatcatgtaagtcctattatagttaaatgatatttat 131

                                                                       
Query: 504 ctaagtggatggccgtattgtgctgggtgtggcaaaagcttgagcagtttccactgtcgc 563
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 130 ctaagtggatggccgtattgtgctgggtgtggcaaaagcttgatcagtttccactgtcgc 71

                                                                       
Query: 564 agttctctatattagatttgtagaagcccagtgaccccattctccttggaaatgtttgta 623
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  agttctctatattagatttgtagaagcccagtgaccccattctccttggaaatgtttgta 11

                     
Query: 624 gatggtttcc 633
           ||||||||||
Sbjct: 10  gatggtttcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)