BAC Information

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BAC

Clone NameMSMg01-540H18
Chromosome16 (Build37)
Map Location 17,070,969 - 17,202,126
singlet/doubletdoublet
Overlap geneYpel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3
Upstream gene2310008H04Rik, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1
Downstream geneGm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540H18.T7 (MSMg01no540_h18.b1)MSMg01-540H18.TJ (MSMg01no540_h18.g1)
ACCAG606724AG606725
length753768
length of high quality
(start - end)		537 (73 - 609)641 (71 - 711)
definitionCHROMAT_FILE: MSMg01no540_h18.b1 PHD_FILE: MSMg01no540_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:46 2005CHROMAT_FILE: MSMg01no540_h18.g1 PHD_FILE: MSMg01no540_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,070,969 - 17,071,505)(17,201,486 - 17,202,126)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACAGGATCCGCGGAAT
TCTGTTTTGGTTACATAATAGACGTTGAAAACATCATTTTTCAGCCCAAG
GTCTTTCTAATTCAGTTGCCTTATAAGTATCCACAATGTATTCACCTTAA
CTAATGTATCTTGTCAAAGAATTGACCATACTCCTCCTCGCTCCGCTGAA
GTTCCAAGACCAGGCTCACCTCCTCTGGGGAACTTCTCCAGGCCCCTCTG
AGTAAGCCACCCTCACCCATCACCCAGGGCCCTTTACCTCTGCTGTGTTC
TGGTAGATGTGTTAACAAATGTTTGCTGAGTACCCGTCTCCCTCTCCCCT
AGGGGCTGGTCCAGTGGGTGTCTGTGTGCATGTGTATGGTGGGGTACAAA
TAAATAAACACACACACACATGTATATTCACCGTGTGTGTGCCTGGTATC
TAGAGAAGCCAGAAGAGGGCATCGGATCCCCTAGAGCCGAAGTTATGGAT
CCTCCACAAGAGCAGCAGGTGCTCAAGGATGTCAGCCCATCTCTCCAGCC
ATACTGTGGGCTCTTAAAAAAGACAGGGGTGCTGTATTTGAAGAGTTTTG
CTACCAGGATCCCTAGGTCTATGTGTTCCTAGCCAAGGGACTATGTGGTT
AGCATGTCTTCTTAGGGATTAGACCCAAATCTTGACTTACCACAGATATA
TAGCAGCCCAGGGGCTGGCCCATATGAAACACTAAAAATACATACATACA
TAC

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTCCTTGTTTGTACTTTACAGGTTTTCTC
CTTGAATCTGAGGCTCACCATCAATTCAGTTAGGCAGGTTAGAAAAAGAA
CTTCAGAGATCTAACTGTAACTTACCTCCCCTGGTGCTAATGACCATGCT
TGCTTCTGTGTGGGTTCTTGGGAACCCAAATTCAGGTCCTTCTTGATCAG
GCAGGCACTTTACCGATTGTATTACGTGTTCAGTAACAGAATAACTTTCT
CATCTCCCAGTTTTGATTTCTTCACAATGTTTAGTAGTGCCTGAAATAAT
CTTGATTATTCTATTATTTTGTGTACACACTATTTATAGTGCACCTACTA
TGTGTCAAGCACTGTATGTACTTGCCATAGGATTGGAGGCGCCATAAAGT
AAGGATCTTTAACTGTCCAGGTCACTCGAGTCTACACAGGATTCTATAGC
CCTGGGACCTGCACACAGTAGGCACATTTCTCTATTCCGCGCTCTTCCCG
GTTAGCCCCTCCCCCGCTCCAGGAAGTGAGGGGGTTCTAGCCGCCTGGCC
TACCGCGATGCATTTTGGGAAAGCAGCAGCACCAGATCCAAGATGGCGGC
CAGCAGGAGGCTGATGAAGGTAAAAGCCATTCTCTGGCGCTGGCCAGGCG
GGGGGCGGCGTCCCCGGGCCGGGACCCCTACGGCGGGCCGCGGTTCCTTG
TGGCGACGCCGTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_h18.b1 MSMg01no540_h18.b1 CHROMAT_FILE:
MSMg01no540_h18.b1 PHD_FILE: MSMg01no540_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:46 2005
         (537 letters)



>mm_chr16_17070769_17071705
          Length = 937

 Score = 1023 bits (529), Expect = 0.0
 Identities = 535/537 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgttgaaaacatcatttttcagcccaaggtctttctaattcagttgccttataagtatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgttgaaaacatcatttttcagcccaaggtctttctaattcagttgccttataagtatcc 260

                                                                       
Query: 61  acaatgtattcaccttaactaatgtatcttgtcaaagaattgaccatactcctcctcgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatgtattcaccttaactaatgtatcttgtcaaagaattgaccatactcctcctcgct 320

                                                                       
Query: 121 ccgctgaagttccaagaccaggctcacctcctctggggaacttctccaggcccctctgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgctgaagttccaagaccaggctcacctcctctggggaacttctccaggcccctctgag 380

                                                                       
Query: 181 taagccaccctcacccatcacccagggccctttacctctgctgtgttctggtagatgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagccaccctcacccatcacccagggccctttacctctgctgtgttctggtagatgtgt 440

                                                                       
Query: 241 taacaaatgtttgctgagtacccgtctccctctcccctaggggctggtccagtgggtgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacaaatgtttgctgagtacccgtctccctctcccctaggggctggtccagtgggtgtc 500

                                                                       
Query: 301 tgtgtgcatgtgtatggtggggtacaaataaataaacacacacacacatgtatattcacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtgcatgtgtatggtggggtacaaataaataaacacacacacacatgtatattcacc 560

                                                                       
Query: 361 gtgtgtgtgcctggtatctagagaagccagaagagggcatcggatcccctagagccgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtgtgtgcctggtatctagagaagccagaagagggcatcggatcccctagagccgaag 620

                                                                       
Query: 421 ttatggatcctccacaagagcagcaggtgctcaaggatgtcagcccatctctccagccat 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 ttatggatcctccacaagagcagcaggtgctaaaggatgtcagcccatctctccagccat 680

                                                                    
Query: 481 actgtgggctcttaaaaaagacaggggtgctgtatttgaagagttttgctaccagga 537
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgtgggctcttaaaaaagtcaggggtgctgtatttgaagagttttgctaccagga 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no540_h18.g1 MSMg01no540_h18.g1 CHROMAT_FILE:
MSMg01no540_h18.g1 PHD_FILE: MSMg01no540_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:46 2005
         (641 letters)



>mm_chr16_17201424_17202464
          Length = 1041

 Score = 1232 bits (637), Expect = 0.0
 Identities = 640/641 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccttgtttgtactttacaggttttctccttgaatctgaggctcaccatcaattcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tttccttgtttgtactttacaggttttctccttgaatctgaggctcaccatcaattcagt 644

                                                                       
Query: 61  taggcaggttagaaaaagaacttcagagatctaactgtaacttacctcccctggtgctaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 643 taggcaggttagaaaaagaacttcagagatctaactgtaacttacctcccctagtgctaa 584

                                                                       
Query: 121 tgaccatgcttgcttctgtgtgggttcttgggaacccaaattcaggtccttcttgatcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tgaccatgcttgcttctgtgtgggttcttgggaacccaaattcaggtccttcttgatcag 524

                                                                       
Query: 181 gcaggcactttaccgattgtattacgtgttcagtaacagaataactttctcatctcccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gcaggcactttaccgattgtattacgtgttcagtaacagaataactttctcatctcccag 464

                                                                       
Query: 241 ttttgatttcttcacaatgtttagtagtgcctgaaataatcttgattattctattatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttttgatttcttcacaatgtttagtagtgcctgaaataatcttgattattctattatttt 404

                                                                       
Query: 301 gtgtacacactatttatagtgcacctactatgtgtcaagcactgtatgtacttgccatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gtgtacacactatttatagtgcacctactatgtgtcaagcactgtatgtacttgccatag 344

                                                                       
Query: 361 gattggaggcgccataaagtaaggatctttaactgtccaggtcactcgagtctacacagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gattggaggcgccataaagtaaggatctttaactgtccaggtcactcgagtctacacagg 284

                                                                       
Query: 421 attctatagccctgggacctgcacacagtaggcacatttctctattccgcgctcttcccg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 attctatagccctgggacctgcacacagtaggcacatttctctattccgcgctcttcccg 224

                                                                       
Query: 481 gttagcccctcccccgctccaggaagtgagggggttctagccgcctggcctaccgcgatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gttagcccctcccccgctccaggaagtgagggggttctagccgcctggcctaccgcgatg 164

                                                                       
Query: 541 cattttgggaaagcagcagcaccagatccaagatggcggccagcaggaggctgatgaagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 cattttgggaaagcagcagcaccagatccaagatggcggccagcaggaggctgatgaagg 104

                                                    
Query: 601 taaaagccattctctggcgctggccaggcggggggcggcgt 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 taaaagccattctctggcgctggccaggcggggggcggcgt 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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