BAC Information

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BAC

Clone NameMSMg01-540L12
Chromosome16 (Build37)
Map Location 66,339,724 - 66,339,988
singlet/doubletsinglet
Overlap genenone
Upstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540L12.T7 (MSMg01no540_l12.b1)MSMg01-540L12.TJ (MSMg01no540_l12.g1)
ACCAG606904AG606905
length729721
length of high quality
(start - end)		269 (47 - 315)563 (79 - 641)
definitionCHROMAT_FILE: MSMg01no540_l12.b1 PHD_FILE: MSMg01no540_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:05 2005CHROMAT_FILE: MSMg01no540_l12.g1 PHD_FILE: MSMg01no540_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGATCCGC
GGAATTCAATAAACATATGATATTGAAGAATATTTTTGTCAAAATGTCAT
TAAATAATATAAATAAAAAATGATATGAGGGTGTGTACCTAGCCTTATTT
TTGTTATGCTAGGTTCAGTTGATACCTCAGGAAGCCTGGTCTTTTCTGAA
GGAAAAAATATAAGCAGTGGGTCGGGGGGCATAGGGGGAGAGGAGGTTGA
GGAGGAGATGTGAGGAGTAAATTAAGAGAGGATGCAGTGGGATTTATGGT
ATGAAAGAAGAACACATATTGATAAAAAAGTAAAATTACAAGTAACTGAG
CTTTTGTTGTCTATCAAACTACAAATGTGAAAACATTCACCAGTAACGAA
TGATAAGTACGACAGTGGGCAAATGAATATGAATAAGCTATTTGGGCAGC
TATCAGAGATATGCATAATACAGGACATCTGTAATGAGAAAAGCATACAT
ACTCAAACTCATACAAACACACATTCATGCTCACACTGGTCTACATATTC
ATGACTCACTCATGTAAACATACACACCTCTCTGCTCATGCCCCTTTTTG
TTAATACCTATTCTTCAGTACCGCTTAAGCTCTTACCGCCCTTTCTCTGT
AAAGAAGTGAATGTCTCTTGACAAAAGGTATATTATTGCTTAAAATTAAC
TCTTGTCTAGAATGATTTTTTCCTTCCCA

TCTCTGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAGGAAACAGACTGGG
AGGAAGAAGCAGCCCATTACCAGCCAGCTAATTGGTCAAGAAAAAAGCCA
AAAGCGGCTGGCGAAAGCCAGCGTACTGTTCAACCTCCGGGCAGTCGGTT
TCAAGGTCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCAAT
GCGCAGAGAGGCAATGCGCAGAGAGGCAATGCGCAGAGAGGCAGTGCGCA
GAGAGGCAGTGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAAT
ACAACAGGCATTTCCAGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACG
CTCCGGTAGAATACGTACAGATTAAAGAACTCGCCGAGTCGGTCCGTAAA
TACGGAACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTCGCCGG
CATGGCACTAACTCCTGCTGACTGGCAAACGATTGTAAAAGCCGCTCTCC
CTAGTATGGGCAAATATATGGAAAGGAGAGCGCTTTGGCACGAAGCTGCA
CAAGCGCAGGCCCGAACAAACGCAGCTGCTTTGACTCCAGAGCAGAGAGA
TTGGACTTTTGACTTGTTAACGGGTCAGGNAGCTTATTCTGCTGATCAGA
CAAACTACCATTGGGGAGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_l12.b1 MSMg01no540_l12.b1 CHROMAT_FILE:
MSMg01no540_l12.b1 PHD_FILE: MSMg01no540_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:05 2005
         (269 letters)



>mm_chr16_66339449_66340118
          Length = 670

 Score =  458 bits (237), Expect = e-133
 Identities = 258/265 (97%), Gaps = 1/265 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcaataaacatatgatattgaagaatatttttgtcaaaatgtcattaaataatat 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggaattcaataaacaaataatattgaagaatatttttgtcaaaatgtcattaaataatat 481

                                                                       
Query: 65  aaataaaaaatgatatgagggtgtgtacctagccttatttttgttatgctaggttcagtt 124
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaattaaaaatgatatgagggtttgtacctagccttatttttgttatgctaggttcagtt 421

                                                                       
Query: 125 gatacctcaggaagcctggtcttttctgaaggaaaaaatataagcagtgggtcggggggc 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 420 gatacctcaggaagcctggtcttttctgaaggaaaaaatatgagcagtgggtcggggggc 361

                                                                       
Query: 185 atagggggagaggaggttgaggaggagatgtgaggagtaaattaagagaggatgcagt-g 243
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 360 agagggggagaggaggttgaggaggagatgtgaggagtaaattaagagaggatgcagtgg 301

                                    
Query: 244 ggatttatggtatgaaagaagaaca 268
           |||||||||||||||||||||||||
Sbjct: 300 ggatttatggtatgaaagaagaaca 276


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 670
Length adjustment: 9
Effective length of query: 260
Effective length of database: 661
Effective search space:   171860
Effective search space used:   171860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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