Query= MSMg01no541_c13.b1 MSMg01no541_c13.b1 CHROMAT_FILE:
MSMg01no541_c13.b1 PHD_FILE: MSMg01no541_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:42 2005
(708 letters)
>mm_chr16_95573233_95574338
Length = 1106
Score = 1230 bits (636), Expect = 0.0
Identities = 687/708 (97%), Gaps = 8/708 (1%)
Strand = Plus / Minus
Query: 4 ggaattctggtcagtagcctgcccggtggtagccatcaacaggaaatgaaacacaaccct 63
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 906 ggaattctggtcagaagcctgcctggtggtagccatcaacaggaaatgaaacacaaccct 847
Query: 64 cccatttcccccatcccatcctccagtctcagcacacgacagcggctgccaggtggtgcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 cccatttcccccatcccatcctccagtctcagcacacgacagcggctgccaggtggtgcc 787
Query: 124 tctgatacagagcacagagcaggctcgttgaaagcacagggttccagcagtcctagctgc 183
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tctgatacagagcacagagcacgctcgttgaaagcacagggttccagcagtcctagctgc 727
Query: 184 ttgtgcccgacatcagtgaagagactccgcacacatgggctgctcacttggtgtctccac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttgtgcccgacatcagtgaagagactccgcacacatgggctgctcacttggtgtctccac 667
Query: 244 tgatctgcttttggctctcagaggtggaggccagctcacactgggaaggtcctgcctcca 303
|||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 666 tgatctgcctttgtctctcagagatggaggccagctcccactgggaaggtcctgcctcca 607
Query: 304 ggtcaagctcccccactcctgtccatattcactatcgacc---cccaagagtcagacaga 360
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 606 ggtcaagctcccccactcctgtccatattcactatcaaccggg-----gagtcagacaga 552
Query: 361 caaatagacaaatacggctgcaataggagtacccgtttcacatgtagcagtgggatgata 420
||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 551 caaatagacaaatacagctgcaataggagaaaccggttcacatgtagcagtgggatgata 492
Query: 421 gcatcccagccctcattgatatgtttagccagacacggggcagaaagcagactcctagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gcatcccagccctcattgatatgtttagccagacacggggcagaaagcagactcctagac 432
Query: 481 agagacaggtatttcagagtaggtctcaccttctcctgtgggagaaagcctgcatgagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agagacaggtatttcagagtaggtctcaccttctcctgtgggagaaagcctgcatgagag 372
Query: 541 ctttacgaaccctttctatggaaacgtggctaatgaggattaacagttccgtacgcgaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctttacgaaccctttctatggaaacgtggctaatgaggattaacagttccgtacgcgaca 312
Query: 601 acggaggacaatggacttgtctagggttgggtgacgtagcagttcttcttgctctcacca 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 311 acggaggacaatggacttgtctagggttgggtgacttagcagttcttcttgctctcacca 252
Query: 661 cagtctgcctctgtatctttgacagccctggacacgaggcacttacaa 708
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cagtctgcctctgtatctttgacagccctggacacgaggcacttacaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1106
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1096
Effective search space: 765008
Effective search space used: 765008
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no541_c13.g1 MSMg01no541_c13.g1 CHROMAT_FILE:
MSMg01no541_c13.g1 PHD_FILE: MSMg01no541_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:42 2005
(657 letters)
>mm_chr16_95419371_95420428
Length = 1058
Score = 1241 bits (642), Expect = 0.0
Identities = 654/658 (99%), Gaps = 1/658 (0%)
Strand = Plus / Plus
Query: 1 tctgatcagaattagcccaccattgcatttgaaggtgactagacttagggatacatccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgatcagaattagcccaccattgcatttgaaggtgactagacttagggatacatccct 260
Query: 61 gtaatgggtagcccagaatgcacagtaggagagaagaagctgaaagacagcgaagtgacc 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gtaatgggtagcccagaatgcacagtgggagagaagaagctgaaagacagcgaagtgacc 320
Query: 121 tgctttgtctgaaattatctatggctaaggtgggaagactgttccccagaagggaaactg 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctttttctgaaattatctatggctaaggtgggaagactgttccccagaagggaaactg 380
Query: 181 cgcactgtccttaatggtctgtttgggggtctgtacatcagaatggacacatttccttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgcactgtccttaatggtctgtttgggggtctgtacatcagaatggacacatttccttag 440
Query: 241 catgggaatttcctgtgagaaaa-gtctccccagggaaccttaccgaagatgggtgcttt 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgggaatttcctgtgagaaaaagtctccccagggaaccttaccgaagatgggtgcttt 500
Query: 300 atgtcatttacaattatgtcagatgtgttggctctcttacacactgataaagcctctttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtcatttacaattatgtcagatgtgttggctctcttacacactgataaagcctctttt 560
Query: 360 gagatgccaggtacaccctacatgtgaattaccagggacatttaaccagactcaagctca 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 gagatgccaggtacaccctacatgtgaattaccagggacatttaaccaaactcaagctca 620
Query: 420 gtcctgtgagattaggcaatctttgtgtgcaacctaggtatttacaatgaatttgtagct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcctgtgagattaggcaatctttgtgtgcaacctaggtatttacaatgaatttgtagct 680
Query: 480 gattttacattccttgacattttaagactcatagatctagaagataattcaacccctgct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattttacattccttgacattttaagactcatagatctagaagataattcaacccctgct 740
Query: 540 ggcattgggcatatgttgaatatgtgtgtgtgggtgtctttgggtgttgtcaatactacg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcattgggcatatgttgaatatgtgtgtgtgggtgtctttgggtgttgtcaatactacg 800
Query: 600 aaaatctcaaccaaacaagcatgccccaaataaccagtcaccatcttccatgtcccag 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaatctcaaccaaacaagcatgccccaaataaccagtcaccatcttccatgtcccag 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1058
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1048
Effective search space: 678056
Effective search space used: 678056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
