Query= MSMg01no542_d24.b1 MSMg01no542_d24.b1 CHROMAT_FILE:
MSMg01no542_d24.b1 PHD_FILE: MSMg01no542_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:13 2005
(606 letters)
>mm_chr16_64333126_64334131
Length = 1006
Score = 1046 bits (541), Expect = 0.0
Identities = 588/605 (97%), Gaps = 4/605 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatatgaatgactccggcaagagctggctaagcattgggttatctaagcactga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatatgaatgactccggcaagagctggctaagcattgggttatctaagcactga 263
Query: 64 tcccataacacccttgcataaaatagccgtgaataatcttatggatttagttttgttttc 123
|||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 264 ccccacaacacccttgcataaaatagccgtgaataatcttattgatttagttttgctttc 323
Query: 124 aaagcaaagaagtgatgtgatataagcaagagtttgattttttttttcaaaagagtgaaa 183
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 324 aaagcagagaagtgatgtgatataagtaagagtttgatttttttt--caaaagagtgaaa 381
Query: 184 tatggactgttatctctgaaggcataatcatggatcacttgattatctcctttgtaggta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tatggactgttatctctgaaggcataatcatggatcacttgattatctcctttgtaggta 441
Query: 244 gagagaagaaaattggtcatttttacttacatgtagcattgaaattattttgtgtgtata 303
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 442 gagagaagaaaattggtcatttttacttatatatagcattgaaattattttgtgtgtata 501
Query: 304 tctaaatgtggataaagctaattgtaacaaggcaaatatttcaaagaaatgactaatcaa 363
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tctaaatgtggctaaagctaattgtaacaaggcaaatatttcaaagaaatgactaatcaa 561
Query: 364 gtacatatatctccctatttctaccatgtatgcccaaccaccccttccctcaatatgtgt 423
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 562 gtacatatatctccctatttctaccacatatgcccaaccaccccttccctcaatatgtgt 621
Query: 424 aattttataatgtgctcaaaaacccatcactacctgtttcctgcttcattcttgaaaaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aattttataatgtgctcaaaaacccatcactacctgtttcctgcttcattcttgaaaaaa 681
Query: 484 aaaa--gaacagcatcaatctaagtagcaaattgttcacttttttgtttatatttatcta 541
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaaatagaacagcatcaatctaagtagcaaattgttcacttttttgtttatatttatctg 741
Query: 542 gctcgtaaaataactttccatttgaaaggcctaagtagtacaacttaaaaagattctgtt 601
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gctcataaaataactttccatttgaaaggcctaagtagtacaacttaaaaagattctgtt 801
Query: 602 gtaag 606
|||||
Sbjct: 802 gtaag 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_d24.g1 MSMg01no542_d24.g1 CHROMAT_FILE:
MSMg01no542_d24.g1 PHD_FILE: MSMg01no542_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:13 2005
(618 letters)
>mm_chr16_64528654_64529671
Length = 1018
Score = 967 bits (500), Expect = 0.0
Identities = 530/540 (98%), Gaps = 1/540 (0%)
Strand = Plus / Minus
Query: 79 tggagataactttatggagcatggcacatgagaatgtgtcagggcggttttggggatgat 138
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1017 tggagataactttatggagcatggcacatgagaatgtgtcggggcggttttggggatgat 958
Query: 139 accttgatgagtcgtatatagaaggaatgtggggtgcttctggatggaagcctgccttca 198
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 accttgatgagtagtatatagaaggaatgtggggtgcttctggatggaagcctgccttca 898
Query: 199 gcatggatcttgttgatttacccaaaaattcatcttgcctttgatgtttgttttttagta 258
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 897 gcatggatcttgttgatttacccaaaaattcatcttgcctttgatgtttgttcttcagta 838
Query: 259 atttttttatccactgacccattccattcgcccattttacactgggagttcagctaaagt 318
| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 a-tttttcatccactgaaccattccattcgcccattttacactgggagttcagctaaagt 779
Query: 319 tctcctgaaatgtaaaaattccactaggaaggctgagtttagttcagtggtagattattt 378
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tctcctgaaatgtaaaaattctactaggaaggctgagtttagttcagtggtagattattt 719
Query: 379 gcttagtgtatattagtgtatattcaggctacatcagtgtcaccaaaatattattccagt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gcttagtgtatattagtgtatattcaggctacatcagtgtcaccaaaatattattccagt 659
Query: 439 ggttcttccatgccttcgtcctatgcttgccttctgaaataaagcccactgagccttagc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ggttcttccatgccttcgtcctatgcttgccttctgaaataaagcccactgagccttagc 599
Query: 499 aagaagtaccatgagtcatctgtttctttaatgagctccatacttcgcctgccccttgct 558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aagaagtaccatgagtcgtctgtttctttaatgagctccatacttcgcctgccccttgct 539
Query: 559 tgctacttcatcagggagattggtttttattctaagggaaattaacatcaacttatttca 618
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 538 tgctacttcatcagggagattggtttttattctaagggaaattaatatcaacttatttca 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
