BAC Information

Click to search

BAC

Clone NameMSMg01-543H08
Chromosome16 (Build37)
Map Location 70,267,923 - 70,452,440
singlet/doubletdoublet
Overlap geneGbe1
Upstream geneSpeer2, EG664930
Downstream geneD16Ertd519e, LOC100039231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543H08.T7 (MSMg01no543_h08.b1)MSMg01-543H08.TJ (MSMg01no543_h08.g1)
ACCAG608989AG608990
length748749
length of high quality
(start - end)
476 (72 - 547)617 (77 - 693)
definitionCHROMAT_FILE: MSMg01no543_h08.b1 PHD_FILE: MSMg01no543_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:50 2005CHROMAT_FILE: MSMg01no543_h08.g1 PHD_FILE: MSMg01no543_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,451,965 - 70,452,440)(70,267,923 - 70,268,539)
sequence
TCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACACTTTCCCAGAATTGCTGGAAAATTGAGAAACTTCTTTCG
TCATATCACCATTTGGGAAGAAACTGAAACTGAAGAAATGAGAAACTCTA
ACCAAATTACATGCCACATTAGCAATGTTTTCTCCACAACTGCTACCATA
ATTTCCCTATGATTCTATCATATTTATAAAATGTAAATAAATAATTGGTG
TTTAAAATTCATAAACATCATTTTTCATTATTTATCTAGGCTACATATCC
CCTCAATGAAATCCCGAACTTTTTAAATATGCATGACGGAGAACAAGTGC
CGTACTATGACTTGAAGCAGAGTATGTTGGTAAATTATTTATTTCATGTT
TAACCATAATGACTGAATCATTCTTTCTAAATCACAGATGTCTGGGTCAT
TTGCCAGAGAAAAAAACAGAATGCCAAAACAATTAAATTTATATGTTTGC
TGACTGACAAATTGGTGTTTTCTAGGCTGGCTGTTCTATAAAACTGCTGC
AGGCAAAGGGTTAATAAATGTCAGTGGACATTTTGTTCACGTTCTATGTT
CATCATCAATTTCCTGATAAATTGAAATTTAATGTTTTATAAAGCACATA
CTTTCATGCTCTGAGTCCACAGTTACTAAATTTATTGAAAAATAAAATGG
CATTTCATTCAACTAGCTCAATAAATTGATGGGTATTTACCCAAACTN
NCCCGATGACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTCAGGTGAGGGTGGGCTTTGAG
AGTGTATAACATTGACCCACTTCCAGTTCACTCTCTCCTATTGCCCTGAG
AGAACAAGATCAGCCAGTTTCCTAATAGAGCACATTGGGCTGAAGATAGC
ATATCTAAGTAAGTTAGACCTAAGGTTAGAAATGGTTTAGGTGGAATGAA
GCTAGGTAGACAGAGGGGACGTGGTTGGTGTGCAAGATTTGCATTCTGGT
CAAAGCTTAGTATGTGTGGATATATCTAATTGGCTGGGGAGTTTGGATGT
GGTGTCTGACAGACCCGTAGACAGCCAGCATCTAAGGTAGGTATATCCTG
GCATAAACCTAGATGTTGAATGTGGTAGAGGCAGAAGTCCCCCGCATTGG
CTGAAACATTGAAAGTAGAAACTAGGCAGATCTGGTGGGTTTGTGACAGC
ACTCCTTAGAAAAGGCAGAAAATGAGATTTGCGGGAAGTAGTTTCTGCTC
AAAGCAAGGAAGAAAGCCAGAACTTGTTACCCTATCAAAGGAACAATATT
GTATAGCTGAATCAAGATTTTTCTCTTGATTAGGTTTCAGTATAATTTTT
GTAATATAAGCTACCATGAAAAATAAAGAAGCAGTATTTTGACTAAGCAT
AAATTGTGATTGCTTAACAAACAATTTATTTCTTTACTCTAAGTCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_h08.b1 MSMg01no543_h08.b1 CHROMAT_FILE:
MSMg01no543_h08.b1 PHD_FILE: MSMg01no543_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:50 2005
         (476 letters)



>mm_chr16_70451765_70452640
          Length = 876

 Score =  890 bits (460), Expect = 0.0
 Identities = 472/476 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgctggaaaattgagaaacttctttcgtcatatcaccatttgggaagaaactgaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 attgctggaaaattgagaaacttctttcgtcatatcaccatttgggaagaaactgaaact 617

                                                                       
Query: 61  gaagaaatgagaaactctaaccaaattacatgccacattagcaatgttttctccacaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gaagaaatgagaaactctaaccaaattacatgccacattagcaatgttttctccacaact 557

                                                                       
Query: 121 gctaccataatttccctatgattctatcatatttataaaatgtaaataaataattggtgt 180
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 556 gctaccataatttccctatgattctatcatatttataaaacgtaaataaataataggtgt 497

                                                                       
Query: 181 ttaaaattcataaacatcatttttcattatttatctaggctacatatcccctcaatgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttaaaattcataaacatcatttttcattatttatctaggctacatatcccctcaatgaaa 437

                                                                       
Query: 241 tcccgaactttttaaatatgcatgacggagaacaagtgccgtactatgacttgaagcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 436 tcccgaactttttaaatatgcatgacggagaacaagtgccgtactatgacttgaagcgga 377

                                                                       
Query: 301 gtatgttggtaaattatttatttcatgtttaaccataatgactgaatcattctttctaaa 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 376 gtatgttggtaaattatttatttcatgtttaaccagaatgactgaatcattctttctaaa 317

                                                                       
Query: 361 tcacagatgtctgggtcatttgccagagaaaaaaacagaatgccaaaacaattaaattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tcacagatgtctgggtcatttgccagagaaaaaaacagaatgccaaaacaattaaattta 257

                                                                   
Query: 421 tatgtttgctgactgacaaattggtgttttctaggctggctgttctataaaactgc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tatgtttgctgactgacaaattggtgttttctaggctggctgttctataaaactgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no543_h08.g1 MSMg01no543_h08.g1 CHROMAT_FILE:
MSMg01no543_h08.g1 PHD_FILE: MSMg01no543_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:50 2005
         (617 letters)



>mm_chr16_70267723_70268739
          Length = 1017

 Score = 1170 bits (605), Expect = 0.0
 Identities = 614/617 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcaggtgagggtgggctttgagagtgtataacattgacccacttccagttcactctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcaggtgagggtgggctttgagagtgtataacattgacccacttccagttcactctct 260

                                                                       
Query: 61  cctattgccctgagagaacaagatcagccagtttcctaatagagcacattgggctgaaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 cctattgccctgagagaacaagatcagccagtttcctaatagagcacactgggctgaaga 320

                                                                       
Query: 121 tagcatatctaagtaagttagacctaaggttagaaatggtttaggtggaatgaagctagg 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcatatttaagtaagttagacctaaggttagaaatggtttaggtggaatgaagctagg 380

                                                                       
Query: 181 tagacagaggggacgtggttggtgtgcaagatttgcattctggtcaaagcttagtatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagacagaggggacgtggttggtgtgcaagatttgcattctggtcaaagcttagtatgtg 440

                                                                       
Query: 241 tggatatatctaattggctggggagtttggatgtggtgtctgacagacccgtagacagcc 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tggatatatctaattggctggggagtttggatgtggtgtctgacaggcccgtagacagcc 500

                                                                       
Query: 301 agcatctaaggtaggtatatcctggcataaacctagatgttgaatgtggtagaggcagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcatctaaggtaggtatatcctggcataaacctagatgttgaatgtggtagaggcagaa 560

                                                                       
Query: 361 gtcccccgcattggctgaaacattgaaagtagaaactaggcagatctggtgggtttgtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcccccgcattggctgaaacattgaaagtagaaactaggcagatctggtgggtttgtga 620

                                                                       
Query: 421 cagcactccttagaaaaggcagaaaatgagatttgcgggaagtagtttctgctcaaagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagcactccttagaaaaggcagaaaatgagatttgcgggaagtagtttctgctcaaagca 680

                                                                       
Query: 481 aggaagaaagccagaacttgttaccctatcaaaggaacaatattgtatagctgaatcaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggaagaaagccagaacttgttaccctatcaaaggaacaatattgtatagctgaatcaag 740

                                                                       
Query: 541 atttttctcttgattaggtttcagtataatttttgtaatataagctaccatgaaaaataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atttttctcttgattaggtttcagtataatttttgtaatataagctaccatgaaaaataa 800

                            
Query: 601 agaagcagtattttgac 617
           |||||||||||||||||
Sbjct: 801 agaagcagtattttgac 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)