NNNNNAACCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCATAATCTGAATATTTTTATTAAATGATATTTTATAA
ATCTCTAGAGTTTTCTTCAGAATTCTGTGCTCATCCTCTCAATATCATTT
GGTGTTGTTGCTCCTCATTCACCATGGGGATATGTGGCAGAGGATGCCAT
TAGCTCATCCATGTGCTCCCAAATGGACCCTTGCCTAATAAAGTGCTTAC
CTCCCTGGGTTTAAGTTCAACTTGAATTTTATAGTGTTGGCTTTACTTGA
AAAGACTATGTCCCTTCCAAAGATTGCATTGCTAATGGTAAAACAGGCAT
GTGTGTGTGTGTGTCTGTGTGTCTCTGTGTGCCTCTGTGTGTGTGTGTGT
GTTTTACAGTCTCAGAGTGCCCTGAGCCATGCCCTGCAGTCAGCCAAGCA
TGACTATGATCTTCTGAGAGAGCAGTATGAAGAAGAACAAGAAGTCAAGG
CTGAGCTGCACCGGGCTCTATCTAAAGGCAACAAGGAAACAGTGCAGTGG
AGAGCGAAGTATGAACATGATGCTATGCAGAGAACTGAAGACTTGGAGGA
AGCCAAGTGAGTAGATCAAGGCTATGCTCAACCAGGAATTTGTCATGTAC
AGGAGAATGAGAGTAATGCCGTGTCTCCTCACGATGTTGGCTTAACAAAT
CCTTCTTGAGATTTTTTTTATTAGGTATTTTCCTTG

NNCCCCAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTT
TATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACG
AGATTATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACA
TTGATGGATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACC
TACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAG
CGAGAATTTTATTGAGGATTTTTGCATCGATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGT
GGCTTCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAA
AAAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAAC
TCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATT
TATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAA
CTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCC
ATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGA
TCTGATGGTGTTTTGGATTTCTTCAGGATCCGTTGTTAN

Query= MSMg01no543_h23.b1 MSMg01no543_h23.b1 CHROMAT_FILE:
MSMg01no543_h23.b1 PHD_FILE: MSMg01no543_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:53 2005
         (684 letters)



>mm_chr16_49155072_49156155
          Length = 1084

 Score = 1208 bits (625), Expect = 0.0
 Identities = 657/677 (97%), Gaps = 16/677 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcataatctgaatatttttattaaatgatattttataaatctctagagttttc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggaattctcataatctgaatatttttattaaatgatattttataaatctctagagttttc 247

                                                                       
Query: 64  ttcagaattctgtgctcatcctctcaatatcatttggtgttgttgctcctcattcaccat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttcagaattctgtgctcatcctctcaatatcatttggtgttgttgctcctcattcaccat 307

                                                                       
Query: 124 ggggatatgtggcagaggatgccattagctcatccatgtgctcccaaatggacccttgcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggggatatgtggcagaggatgccattagctcatccatgtgctcccaaatggacccttgcc 367

                                                                       
Query: 184 taataaagtgcttacctccctgggtttaagttcaacttgaattttatag----tgttggc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 368 taataaagtgcttacctccctgggtttaagttcaacttgaattttatagatagtgttggc 427

                                                                       
Query: 240 tttacttgaaaagactatgtcccttccaaagattgcattgctaatggtaaaacaggcatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tttacttgaaaagactatgtcccttccaaagattgcattgctaatggtaaaacaggcatg 487

                                                                       
Query: 300 tgtgtgtgtgtgtctgtgtgtctctgtgtgcctctgtgtgtgtgtgtgtgt--------- 350
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 488 tgtgtgtgtgtgtctgtgtgtctctgtgtgcctctgtgtgtgtgtgtgtgtgtgtgtgtg 547

                                                                       
Query: 351 ---tttacagtctcagagtgccctgagccatgccctgcagtcagccaagcatgactatga 407
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tgttttacagtctcagagtgccctgagccatgccctgcagtcagccaagcatgactatga 607

                                                                       
Query: 408 tcttctgagagagcagtatgaagaagaacaagaagtcaaggctgagctgcaccgggctct 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tcttctgagagagcagtatgaagaagaacaagaagtcaaggctgagctgcaccgggctct 667

                                                                       
Query: 468 atctaaaggcaacaaggaaacagtgcagtggagagcgaagtatgaacatgatgctatgca 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atctaaaggcaacaaggaaacagtgcagtggagagcgaagtatgaacatgatgctatgca 727

                                                                       
Query: 528 gagaactgaagacttggaggaagccaagtgagtagatcaaggctatgctcaaccaggaat 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 gagaactgaagacttggaggaagccaagtgagtagatcaaggctatgctcaaccaagaat 787

                                                                       
Query: 588 ttgtcatgtacaggagaatgagagtaatgccgtgtctcctcacgatgttggcttaacaaa 647
           ||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct: 788 ttgtcatgtacaggagaatgagagtaatgccatgtctcctcatgatgtcggcttaacaaa 847

                            
Query: 648 tccttcttgagattttt 664
           |||||||||||||||||
Sbjct: 848 tccttcttgagattttt 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)