BAC Information

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BAC

Clone NameMSMg01-543L10
Chromosome16 (Build37)
Map Location 3,344,821 - 3,345,555
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042177, LOC100042915, LOC100042188, LOC100042251, LOC100042925
Downstream geneLOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543L10.T7 (MSMg01no543_l10.b1)MSMg01-543L10.TJ (MSMg01no543_l10.g1)
ACCAG609184AG609185
length758754
length of high quality
(start - end)		709 (50 - 758)493 (78 - 570)
definitionCHROMAT_FILE: MSMg01no543_l10.b1 PHD_FILE: MSMg01no543_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:10 2005CHROMAT_FILE: MSMg01no543_l10.g1 PHD_FILE: MSMg01no543_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:10 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCAGCAAATTCAAGGCAACCCCCAGCTATCTTTAAGGGGAC
CTGACATGTTTTTCCTGTGTTTGTGAGGACAAGAACAGTGTACTCATATA
AGTGAAAAATAAGCCTTAAAAGCACAAAACAAAATCAGAGTCTCTTATCA
TAATATGGAAGACTTAAGCATCTTTGTCTTGCTGTGTAGACCAATCAGAC
ATTGAATCCACAAGTTTTGACCTATCCTTTTGTACTGAAAATGAACTATG
TGTTTCTCACCACTATGCCTAGTTGTGACTCTACCTTTTTAAGGTTGTGG
TGATCAACTTTGCTTACATTTCCCATCATTCAATTCTCTCTATGCAAATA
TCTGCAGTGTCTGCTTGCAGGTAGTTCTGATTGACTGTATGATCCTGACA
TTTCTGTGACTCCATTTGAATAATGAGGAACTCATGGTTTTCTTTATCTC
CAAATGTTTTGCCTGTAGTTTGGGTGTGTGGATCACGAGGTTGTCAGGTG
TGGGGAGATTCCAGATGACAGCTTTGCCTATTTAGGTGGGTATTAGCTTT
TGTATGGTTACTGGGAATCAAATCCAGATCCTCTGGAAGAACATCAAGTG
ATTTGAACTGCCATTTTTTTGGACTTCTCTAAAGGACAGGAGGGAGATAT
GTGGAAGAAGTAGAGCTGTGTCATTGGTAACCAAACAGCTATGATTCATT
CTAAGTTN

NCCGAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGGAAATCATCACTCAGGGA
CTTCAGGCAGAAAACTAGCCAGTCAGCCTCTGGATAGACAAGGCTCAACA
GTTCAGAGAACCAGGCCATCGCAAATAGTTCACAGACCTGCAAGGAAGAC
ATGCAGATCCCTGCCCCCCACCCTACCCCTCCCCCAGCCCCACCCAAACA
TAGGGAGAAAAGGCAGTGTGGGGGAGGGGGAGGTGCTGTGAGAGAATTTA
GATAGCTCGAAGAAATAAATAGCTGGAGACTTCATTCATTTACTTATTTT
ATTGAGTATATGGTGAAAGAGGGAAAATGGCTCGAAAAGGAGGGAGGGCA
GACTGTCTTCCCATGCTGGGATCATTCATGCCTTAAGAAGGAATGCAGGA
GGCTGGAGAGATGGCTCAGCGGTTTAGAGCCCTGACTGCTCTTCTGAAGA
TCCTGAGTTCAAATCCCAGCAACCAAATGGTGGGTGGTTCACAACCACCC
ACAATGAGATCTGGTGCCCTCGTCTAGTGTGTCCTACACTGCTACAGTGT
ACTTACATATAATAAATAAATCTGATACATAAGGGGGAGGATTGGTTAGT
TCTATCTCCTTTCTTCTCCCTTCTTTTTTCTTTCTCTTTGCTTCCGTCCC
TTTCTTTTTTGTCCTCCTGTGTGGTTGCTTACCGTTCCCTCTTTTCTCCC
GCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_l10.b1 MSMg01no543_l10.b1 CHROMAT_FILE:
MSMg01no543_l10.b1 PHD_FILE: MSMg01no543_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:10 2005
         (709 letters)



>mm_chr16_3344675_3345783
          Length = 1109

 Score =  797 bits (412), Expect = 0.0
 Identities = 637/762 (83%), Gaps = 90/762 (11%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccagcaaattcaaggcaacccccagctatctttaaggggacctgacatgttttt 64
           ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct: 147 gaattcccagcaaatacaaggcagctcccagctatctttaaggggacctgacatgctttt 206

                                                                       
Query: 65  cctg-tgtttgtgaggacaagaacagtgtactcatataagtgaaaaata----------- 112
           | || ||||| ||| ||||||||||||||||||||| ||||||||||||           
Sbjct: 207 c-tggtgtttctgaagacaagaacagtgtactcatagaagtgaaaaatacatcttagaac 265

                                                                       
Query: 113 -----------agc--------------ctta--------aaa-----------g---ca 125
                      |||              ||||        |||           |   ||
Sbjct: 266 cacaaaacaaaagcagggtcacagtgtacttatataggtgaaaaataaatcttaggacca 325

                                                                       
Query: 126 caaaacaaaatcagagtctcttatcataatatggaagacttaagcat--ctttgtcttgc 183
           |||||||||||||| |||||||||  |||| ||||||||||||  ||  |||||||||||
Sbjct: 326 caaaacaaaatcagggtctcttattttaatctggaagacttaa--atgtctttgtcttgc 383

                                                                       
Query: 184 tgtgtagaccaatcagacattgaatccacaagttttgacctatccttttgtactgaaaat 243
           ||| ||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 384 tgtatagacaaatcaggcattgaaaccacaagtattgac-tatccttttgtactgaaaat 442

                                                                       
Query: 244 gaact-atgtgtttctcaccactatgcctagttgtgactctacctttttaaggttgtggt 302
            || | |||||||||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct: 443 -aagttatgtgtttctcaccactatgcccagctgtgactctatctttttaaggttgtggt 501

                                                                       
Query: 303 gatcaactttgcttaca-tttcccatcattcaattctctctatgcaaatatctgcagtgt 361
           || |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gagcaactttgcttataatttcccatcattcaattctctctatgcaaatatctgcagtgt 561

                                                                       
Query: 362 ctgcttgcaggtagttctgattgactgtatgatcctgacatttctgtgactccatttgaa 421
           |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 562 ctgcctgcaggtagttctgattgactgtatgatcctgacatttctgtggctccatttgaa 621

                                                                       
Query: 422 taatgaggaactcatggttttctttatctccaaatgttttgcctgtagtttgggtgtgtg 481
           ||||||||||| || ||||||||||||||||||||           ||||||||||||||
Sbjct: 622 taatgaggaacccagggttttctttatctccaaat-----------agtttgggtgtgtg 670

                                                                       
Query: 482 gatcacgaggttgtcaggtgtggggagattccagatgacagctttgcctatttaggtggg 541
           |||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||
Sbjct: 671 gatcacgaggttgtcaggtgtgggcagagtccagaagacagctttgcctatttaggtggg 730

                                                                       
Query: 542 tattagcttttgtatggttactgggaatcaaatccagatcctctggaagaacatcaagtg 601
           ||||||||||||           ||||||||||||||||||| |||||||||||||||||
Sbjct: 731 tattagcttttg-----------ggaatcaaatccagatcctatggaagaacatcaagtg 779

                                                                       
Query: 602 atttgaactgccatttttttggacttctctaaaggacaggagggagatatgtggaagaag 661
           |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 780 atttgaactgccatttctttggacttctctaaaggacaggagggaggtatgtggaagaag 839

                                                     
Query: 662 tagagctgtgtcattggtaaccaaacagctatgattcattct 703
           ||||||| |||||  |||||||||||||||||||||||||||
Sbjct: 840 tagagctatgtcaccggtaaccaaacagctatgattcattct 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space:   768201
Effective search space used:   768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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